Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
3
votes
3
replies
1.2k
views
Strandness of Isoseq HiFi reads?
minimap2 pacbio isoseq
updated 8 months ago by ▴ 40 • written 2.7 years ago by ▴ 140
1
vote
1
reply
932
views
How to split a folder full of pod5 by phred score?
phred qc ont nanopore pod5
updated 13 months ago by 147k • written 13 months ago by ▴ 140
4
votes
4
replies
1.8k
views
Minimap2 map-pb index for ONT reads
mapping minimap2 nanopore pacbio long-read
updated 16 months ago by 147k • written 16 months ago by ▴ 140
0
votes
0
replies
1.8k
views
Comment: Comment: Minimap2 map-pb index for ONT reads
16 months ago by compuTE ▴ 140
3
votes
4
replies
2.0k
views
RSeQC confusing output - Half fails to determine, half is reverse strand
RNA-Seq rseqc pair-end
updated 2.0 years ago by ★ 4.3k • written 3.8 years ago by ▴ 140
0
votes
0
replies
1.0k
views
Comment: Comment: Representing several BAM files into one?
2.6 years ago by compuTE ▴ 140
0
votes
1
reply
1.3k
views
Comment: Comment: FastQ files: Double demultiplexing
2.8 years ago by compuTE ▴ 140
2
votes
3
replies
1.3k
views
FastQ files: Double demultiplexing
demultiplex bcl2fastq fastq index illumina
updated 2.8 years ago by 147k • written 2.8 years ago by ▴ 140
0
votes
0
replies
1.1k
views
Comment: Comment: Do I need to trim the reads on samples with <0.2% adapter content?
2.9 years ago by compuTE ▴ 140
0
votes
0
replies
1.1k
views
Comment: Comment: Do I need to trim the reads on samples with <0.2% adapter content?
2.9 years ago by compuTE ▴ 140
3
votes
4
replies
1.1k
views
Do I need to trim the reads on samples with <0.2% adapter content?
adapter map fastqc trim
2.9 years ago by compuTE ▴ 140
0
votes
0
replies
619
views
RSeQC - 3' bias on polyA RNAseq goes wrong!
bias rnaseq rseqc genebody_coverage
3.0 years ago by compuTE ▴ 140
1
vote
1
reply
1.8k
views
Do you RegressOut sex?
rnaseq singlecell 10x seurat
updated 3.1 years ago by ▴ 50 • written 3.1 years ago by ▴ 140
2
votes
5
replies
1.3k
views
Same strand, same QNAME different FLAG?
strand featureCounts SAM RNAseq
3.3 years ago by compuTE ▴ 140
1
vote
0
replies
1.3k
views
Answer: Answer: Same strand, same QNAME different FLAG?
3.3 years ago by compuTE ▴ 140
5
votes
8
replies
2.4k
views
Strand specific quantification with strand-splitted BAM files
featureCounts SAM strand RNAseq
updated 3.3 years ago by 101k • written 3.3 years ago by ▴ 140
1
vote
1
reply
2.4k
views
Answer: Answer: Strand specific quantification with strand-splitted BAM files
3.3 years ago by compuTE ▴ 140
1
vote
0
replies
2.4k
views
Comment: Comment: Strand specific quantification with strand-splitted BAM files
3.3 years ago by compuTE ▴ 140
0
votes
1
reply
2.4k
views
Comment: Comment: Strand specific quantification with strand-splitted BAM files
3.3 years ago by compuTE ▴ 140
0
votes
0
replies
2.4k
views
Comment: Comment: Strand specific quantification with strand-splitted BAM files
3.3 years ago by compuTE ▴ 140
0
votes
0
replies
1.3k
views
Comment: Comment: Same strand, same QNAME different FLAG?
3.3 years ago by compuTE ▴ 140
0
votes
1
reply
1.3k
views
Comment: Comment: Same strand, same QNAME different FLAG?
3.3 years ago by compuTE ▴ 140
0
votes
0
replies
2.3k
views
Question about FindMarkers avg_logFC and how to get all features from an assay
seurat singlecell Seurat
3.6 years ago by compuTE ▴ 140
0
votes
1
reply
1.4k
views
Comment: Comment: Getting libType without running quantification with Salmon
3.6 years ago by compuTE ▴ 140
8
votes
3
replies
1.4k
views
Getting libType without running quantification with Salmon
strandness salmon rnaseq python strand
updated 3.6 years ago by 6.9k • written 3.6 years ago by ▴ 140
0
votes
0
replies
1.1k
views
Comment: Comment: Transcript enrichment in Illumina RNAseq
3.6 years ago by compuTE ▴ 140
1
vote
0
replies
13k
views
Comment: Comment: From BAM to BAI to BIGWIG
3.6 years ago by compuTE ▴ 140
0
votes
3
replies
1.1k
views
Transcript enrichment in Illumina RNAseq
enrichment transcriptomics illumina rnaseq
3.6 years ago by compuTE ▴ 140
0
votes
0
replies
1.4k
views
Rule in snakemake using singularity: unterminated quoted string
singularity snakemake docker cellranger
4.3 years ago by compuTE ▴ 140
2
votes
2
replies
1.0k
views
Representing several BAM files into one?
deepTools BAM bamCompare
2.6 years ago by compuTE ▴ 140
0
votes
0
replies
1.6k
views
Comment: C: Different mappings, different PCAs using TEtranscripts
5.6 years ago by compuTE ▴ 140
0
votes
1
reply
1.6k
views
Comment: C: Different mappings, different PCAs using TEtranscripts
5.6 years ago by compuTE ▴ 140
0
votes
0
replies
1.6k
views
Comment: C: Different mappings, different PCAs using TEtranscripts
5.6 years ago by compuTE ▴ 140
2
votes
6
replies
1.6k
views
Different mappings, different PCAs using TEtranscripts
pca TEtranscripts
5.6 years ago by compuTE ▴ 140
0
votes
0
replies
2.8k
views
Comment: C: StringTie strandness of library in dUTP protocol
5.6 years ago by compuTE ▴ 140
4
votes
3
replies
2.8k
views
StringTie strandness of library in dUTP protocol
stringtie libraryprep rnaseq dutp
updated 5.6 years ago by 8.9k • written 5.6 years ago by ▴ 140
0
votes
0
replies
4.3k
views
Comment: C: DESeq interactions: What genes that are different between two experiments affect
5.7 years ago by compuTE ▴ 140
8
votes
2
replies
4.3k
views
DESeq interactions: What genes that are different between two experiments affects the conditions
DESeq2 RNA-Seq DEA interactions
updated 5.7 years ago by 14k • written 5.7 years ago by ▴ 140
0
votes
1
reply
7.8k
views
Comment: C: Comparing Two Bam Files Obtained From The Same Files And The Exact Settings
5.7 years ago by compuTE ▴ 140
0
votes
0
replies
1.6k
views
Comment: C: Count matrix showing different results than UCSC tracks
5.8 years ago by compuTE ▴ 140
0
votes
3
replies
1.6k
views
Count matrix showing different results than UCSC tracks
ucsc featurecounts bigwig bam mm10
5.8 years ago by compuTE ▴ 140
0
votes
1
reply
13k
views
Comment: C: From BAM to BAI to BIGWIG
5.8 years ago by compuTE ▴ 140
14
votes
5
replies
13k
views
From BAM to BAI to BIGWIG
bigwig samtools index bamCoverage bai
3.6 years ago by compuTE ▴ 140
0
votes
0
replies
1.7k
views
Comment: C: Looking for chimp genome index (STAR)
6.2 years ago by compuTE ▴ 140
3
votes
5
replies
1.7k
views
Looking for chimp genome index (STAR)
STAR mapping chimpanzee chimp genomeindex
updated 6.2 years ago by 13k • written 6.2 years ago by ▴ 140
0
votes
1
reply
1.7k
views
Comment: C: Looking for chimp genome index (STAR)
6.2 years ago by compuTE ▴ 140
0
votes
0
replies
3.3k
views
Comment: C: Illegal instruction (core dumped) - Indexing a reference genome with STAR
6.7 years ago by compuTE ▴ 140
1
vote
4
replies
3.3k
views
Illegal instruction (core dumped) - Indexing a reference genome with STAR
RNA-Seq mapping STAR reference indexing
6.7 years ago by compuTE ▴ 140
48 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6