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13
votes
10
replies
17k
views
6 follow
conversion of GFF3 formate to BED format
RNA-Seq
updated 9 months ago by 44k • written 6.4 years ago by ▴ 110
9
votes
8
replies
5.2k
views
splice junction information with hisat2
hisat2
updated 22 months ago by 44k • written 6.6 years ago by ▴ 110
0
votes
1
reply
1.2k
views
determination of alternate splicing events from assembled transcripts
rna-seq
updated 3.4 years ago by ▴ 590 • written 6.4 years ago by ▴ 110
1
vote
8
replies
5.6k
views
gene IDs in stringtie output
rna-seq
updated 4.2 years ago by ★ 4.1k • written 6.4 years ago by ▴ 110
12
votes
13
replies
13k
views
6 follow
quality trimming with trimmomatic
next-gen
updated 4.7 years ago by ▴ 10 • written 6.6 years ago by ▴ 110
1
vote
1
reply
916
views
determining SJ with SOAPsplice
alignment
updated 5.9 years ago by • 0 • written 6.6 years ago by ▴ 110
5
votes
12
replies
4.8k
views
gene functional analysis using GO and KO numbers
rna-seq
updated 6.3 years ago by 20 • written 6.4 years ago by ▴ 110
0
votes
0
replies
4.8k
views
Comment: C: gene functional analysis using GO and KO numbers
6.4 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
4.8k
views
Comment: C: gene functional analysis using GO and KO numbers
6.4 years ago by blooming.daisy333 ▴ 110
0
votes
2
replies
4.8k
views
Comment: C: gene functional analysis using GO and KO numbers
6.4 years ago by blooming.daisy333 ▴ 110
0
votes
1
reply
4.8k
views
Comment: C: gene functional analysis using GO and KO numbers
6.4 years ago by blooming.daisy333 ▴ 110
0
votes
1
reply
4.8k
views
Comment: C: gene functional analysis using GO and KO numbers
6.4 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
2.2k
views
Comment: C: gene functional analysis
6.4 years ago by blooming.daisy333 ▴ 110
0
votes
1
reply
2.2k
views
Comment: C: gene functional analysis
6.4 years ago by blooming.daisy333 ▴ 110
0
votes
1
reply
2.2k
views
Comment: C: gene functional analysis
6.4 years ago by blooming.daisy333 ▴ 110
5
votes
9
replies
2.2k
views
gene functional analysis
rna-seq
updated 6.4 years ago by ▴ 30 • written 6.4 years ago by ▴ 110
9
votes
7
replies
11k
views
tab to fasta file conversion
rna-seq
updated 6.4 years ago by ▴ 40 • written 6.4 years ago by ▴ 110
0
votes
0
replies
2.3k
views
Comment: C: extraction of original gene iDs from reference annotation file
6.4 years ago by blooming.daisy333 ▴ 110
0
votes
3
replies
2.3k
views
extraction of original gene iDs from reference annotation file
rna-seq
updated 14 months ago by • 0 • written 6.4 years ago by ▴ 110
0
votes
0
replies
1.8k
views
Comment: C: nucleotide extraction using coordinates
6.4 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
17k
views
Comment: C: conversion of GFF3 formate to BED format
6.4 years ago by blooming.daisy333 ▴ 110
0
votes
1
reply
17k
views
Comment: C: conversion of GFF3 formate to BED format
6.4 years ago by blooming.daisy333 ▴ 110
0
votes
1
reply
17k
views
Comment: C: conversion of GFF3 formate to BED format
6.4 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
2.6k
views
Comment: C: Percentage of RNA-seq reads in exonic, intronic, intergenic and splice junction
6.4 years ago by blooming.daisy333 ▴ 110
0
votes
1
reply
5.6k
views
Comment: C: gene IDs in stringtie output
6.4 years ago by blooming.daisy333 ▴ 110
6
votes
5
replies
2.6k
views
Percentage of RNA-seq reads in exonic, intronic, intergenic and splice junction regions
rna-seq
updated 6.5 years ago by 47k • written 6.5 years ago by ▴ 110
7
votes
8
replies
1.8k
views
nucleotide extraction using coordinates
next-gen
updated 6.5 years ago by 21k • written 6.5 years ago by ▴ 110
0
votes
0
replies
2.2k
views
Comment: C: stringTie Warning message
6.5 years ago by blooming.daisy333 ▴ 110
1
vote
7
replies
2.2k
views
stringTie Warning message
next-gen
updated 6.5 years ago by ★ 1.1k • written 6.5 years ago by ▴ 110
0
votes
0
replies
2.2k
views
Comment: C: stringTie Warning message
6.5 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
1.0k
views
determination of alternative splicing events
next-gen
6.5 years ago by blooming.daisy333 ▴ 110
3
votes
3
replies
1.1k
views
alternate splicing event determination
next-gen
updated 6.5 years ago by ▴ 60 • written 6.5 years ago by ▴ 110
0
votes
0
replies
1.1k
views
Comment: C: alternate splicing event determination
6.5 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
2.2k
views
Comment: C: stringTie Warning message
6.5 years ago by blooming.daisy333 ▴ 110
0
votes
1
reply
5.2k
views
Comment: C: splice junction information with hisat2
6.5 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
2.2k
views
Comment: C: Hisat2 alignment error
6.5 years ago by blooming.daisy333 ▴ 110
0
votes
1
reply
2.2k
views
Comment: C: Hisat2 alignment error
6.5 years ago by blooming.daisy333 ▴ 110
0
votes
2
replies
5.2k
views
Comment: C: splice junction information with hisat2
6.5 years ago by blooming.daisy333 ▴ 110
2
votes
4
replies
2.2k
views
Hisat2 alignment error
next-gen
updated 6.5 years ago by 5.9k • written 6.5 years ago by ▴ 110
0
votes
1
reply
3.0k
views
Comment: C: cufflink output FPKM values
6.5 years ago by blooming.daisy333 ▴ 110
1
vote
3
replies
3.0k
views
cufflink output FPKM values
next-gen
updated 6.5 years ago by ★ 3.9k • written 6.5 years ago by ▴ 110
0
votes
0
replies
2.9k
views
Comment: C: sam file without XS attribute
6.5 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
2.9k
views
Comment: C: sam file without XS attribute
6.5 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
2.9k
views
Comment: C: sam file without XS attribute
6.5 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
2.9k
views
Comment: C: sam file without XS attribute
6.5 years ago by blooming.daisy333 ▴ 110
3
votes
7
replies
2.9k
views
sam file without XS attribute
next-gen
updated 6.6 years ago by 20k • written 6.6 years ago by ▴ 110
0
votes
1
reply
8.0k
views
Comment: C: changing name of chromosomes in fasta and GFF3 file
6.6 years ago by blooming.daisy333 ▴ 110
1
vote
2
replies
8.0k
views
Comment: C: changing name of chromosomes in fasta and GFF3 file
6.6 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
8.0k
views
Comment: C: changing name of chromosomes in fasta and GFF3 file
6.6 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
8.0k
views
Comment: C: changing name of chromosomes in fasta and GFF3 file
6.6 years ago by blooming.daisy333 ▴ 110
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