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13
votes
10
replies
18k
views
6 follow
conversion of GFF3 formate to BED format
RNA-Seq
updated 16 months ago by 45k • written 7.0 years ago by ▴ 110
9
votes
8
replies
5.7k
views
splice junction information with hisat2
hisat2
updated 2.4 years ago by 45k • written 7.2 years ago by ▴ 110
0
votes
1
reply
1.4k
views
determination of alternate splicing events from assembled transcripts
rna-seq
updated 3.9 years ago by ▴ 590 • written 6.9 years ago by ▴ 110
1
vote
8
replies
6.3k
views
gene IDs in stringtie output
rna-seq
updated 4.7 years ago by ★ 4.2k • written 7.0 years ago by ▴ 110
12
votes
13
replies
14k
views
6 follow
quality trimming with trimmomatic
next-gen
updated 5.2 years ago by ▴ 10 • written 7.1 years ago by ▴ 110
1
vote
1
reply
1.0k
views
determining SJ with SOAPsplice
alignment
updated 6.4 years ago by • 0 • written 7.2 years ago by ▴ 110
5
votes
12
replies
5.2k
views
gene functional analysis using GO and KO numbers
rna-seq
updated 6.8 years ago by 20 • written 7.0 years ago by ▴ 110
0
votes
0
replies
5.2k
views
Comment: C: gene functional analysis using GO and KO numbers
6.9 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
5.2k
views
Comment: C: gene functional analysis using GO and KO numbers
6.9 years ago by blooming.daisy333 ▴ 110
0
votes
2
replies
5.2k
views
Comment: C: gene functional analysis using GO and KO numbers
6.9 years ago by blooming.daisy333 ▴ 110
0
votes
1
reply
5.2k
views
Comment: C: gene functional analysis using GO and KO numbers
7.0 years ago by blooming.daisy333 ▴ 110
0
votes
1
reply
5.2k
views
Comment: C: gene functional analysis using GO and KO numbers
7.0 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
2.7k
views
Comment: C: gene functional analysis
7.0 years ago by blooming.daisy333 ▴ 110
0
votes
1
reply
2.7k
views
Comment: C: gene functional analysis
7.0 years ago by blooming.daisy333 ▴ 110
0
votes
1
reply
2.7k
views
Comment: C: gene functional analysis
7.0 years ago by blooming.daisy333 ▴ 110
5
votes
9
replies
2.7k
views
gene functional analysis
rna-seq
updated 7.0 years ago by ▴ 30 • written 7.0 years ago by ▴ 110
9
votes
7
replies
11k
views
tab to fasta file conversion
rna-seq
updated 7.0 years ago by ▴ 40 • written 7.0 years ago by ▴ 110
0
votes
0
replies
2.5k
views
Comment: C: extraction of original gene iDs from reference annotation file
7.0 years ago by blooming.daisy333 ▴ 110
0
votes
3
replies
2.5k
views
extraction of original gene iDs from reference annotation file
rna-seq
updated 21 months ago by • 0 • written 7.0 years ago by ▴ 110
0
votes
0
replies
2.1k
views
Comment: C: nucleotide extraction using coordinates
7.0 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
18k
views
Comment: C: conversion of GFF3 formate to BED format
7.0 years ago by blooming.daisy333 ▴ 110
0
votes
1
reply
18k
views
Comment: C: conversion of GFF3 formate to BED format
7.0 years ago by blooming.daisy333 ▴ 110
0
votes
1
reply
18k
views
Comment: C: conversion of GFF3 formate to BED format
7.0 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
3.0k
views
Comment: C: Percentage of RNA-seq reads in exonic, intronic, intergenic and splice junction
7.0 years ago by blooming.daisy333 ▴ 110
0
votes
1
reply
6.3k
views
Comment: C: gene IDs in stringtie output
7.0 years ago by blooming.daisy333 ▴ 110
6
votes
5
replies
3.0k
views
Percentage of RNA-seq reads in exonic, intronic, intergenic and splice junction regions
rna-seq
updated 7.0 years ago by 48k • written 7.0 years ago by ▴ 110
7
votes
8
replies
2.1k
views
nucleotide extraction using coordinates
next-gen
updated 7.0 years ago by 21k • written 7.0 years ago by ▴ 110
0
votes
0
replies
2.5k
views
Comment: C: stringTie Warning message
7.1 years ago by blooming.daisy333 ▴ 110
1
vote
7
replies
2.5k
views
stringTie Warning message
next-gen
updated 7.1 years ago by ★ 1.1k • written 7.1 years ago by ▴ 110
0
votes
0
replies
2.5k
views
Comment: C: stringTie Warning message
7.1 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
1.1k
views
determination of alternative splicing events
next-gen
7.1 years ago by blooming.daisy333 ▴ 110
3
votes
3
replies
1.3k
views
alternate splicing event determination
next-gen
updated 7.1 years ago by ▴ 60 • written 7.1 years ago by ▴ 110
0
votes
0
replies
1.3k
views
Comment: C: alternate splicing event determination
7.1 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
2.5k
views
Comment: C: stringTie Warning message
7.1 years ago by blooming.daisy333 ▴ 110
0
votes
1
reply
5.7k
views
Comment: C: splice junction information with hisat2
7.1 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
2.5k
views
Comment: C: Hisat2 alignment error
7.1 years ago by blooming.daisy333 ▴ 110
0
votes
1
reply
2.5k
views
Comment: C: Hisat2 alignment error
7.1 years ago by blooming.daisy333 ▴ 110
0
votes
2
replies
5.7k
views
Comment: C: splice junction information with hisat2
7.1 years ago by blooming.daisy333 ▴ 110
2
votes
4
replies
2.5k
views
Hisat2 alignment error
next-gen
updated 7.1 years ago by 5.9k • written 7.1 years ago by ▴ 110
0
votes
1
reply
3.2k
views
Comment: C: cufflink output FPKM values
7.1 years ago by blooming.daisy333 ▴ 110
1
vote
3
replies
3.2k
views
cufflink output FPKM values
next-gen
updated 7.1 years ago by ★ 4.0k • written 7.1 years ago by ▴ 110
0
votes
0
replies
3.2k
views
Comment: C: sam file without XS attribute
7.1 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
3.2k
views
Comment: C: sam file without XS attribute
7.1 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
3.2k
views
Comment: C: sam file without XS attribute
7.1 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
3.2k
views
Comment: C: sam file without XS attribute
7.1 years ago by blooming.daisy333 ▴ 110
3
votes
7
replies
3.2k
views
sam file without XS attribute
next-gen
updated 7.1 years ago by 21k • written 7.1 years ago by ▴ 110
0
votes
1
reply
8.8k
views
Comment: C: changing name of chromosomes in fasta and GFF3 file
7.1 years ago by blooming.daisy333 ▴ 110
1
vote
2
replies
8.8k
views
Comment: C: changing name of chromosomes in fasta and GFF3 file
7.1 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
8.8k
views
Comment: C: changing name of chromosomes in fasta and GFF3 file
7.1 years ago by blooming.daisy333 ▴ 110
0
votes
0
replies
8.8k
views
Comment: C: changing name of chromosomes in fasta and GFF3 file
7.1 years ago by blooming.daisy333 ▴ 110
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