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Best package to cluster a single cell dataset using marker gene lists retrieved from elsewhere?
RNA-Seq single cell sequencing clustering
updated 4.2 years ago by ▴ 90 • written 5.0 years ago by ▴ 30
1
vote
2
replies
2.0k
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How to use SingleR for annotating single-cell transcriptomics dataset with our own custom made bulk RNA data?
single cell sequencing annotation singleR
updated 2.6 years ago by ▴ 920 • written 4.9 years ago by ▴ 30
13
votes
3
replies
3.6k
views
Single cell cluster annotation and validation tools: recommendations?
single cell sequencing sc-RNA RNA-Seq
updated 5.0 years ago by ★ 18k • written 5.0 years ago by ▴ 30
0
votes
1
reply
2.2k
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Comment: C: Algorithm for clustering single cells based on SNPs?
5.1 years ago by A248 ▴ 30
1
vote
4
replies
2.2k
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Algorithm for clustering single cells based on SNPs?
10x-genomics SNP single-cell
updated 17 months ago by 44k • written 5.1 years ago by ▴ 30
2
votes
1
reply
1.3k
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How can I retrieve TPM values for selected genes from transcriptome data in a Bioproject on NCBI?
rna-seq Assembly genome next-gen
5.9 years ago by A248 ▴ 30
1
vote
4
replies
3.1k
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How can I download a fasta file of all homologs to a given protein?
alignment sequence
updated 6.6 years ago by 147k • written 6.6 years ago by ▴ 30
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