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0
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2.3k
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Comment: Comment: extract barcode from a fastq file
2.3 years ago by lkianmehr ▴ 100
0
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0
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538
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Where are the barcode sequences of the ion torrent data
demultiplexing barcodes iontorrent
2.3 years ago by lkianmehr ▴ 100
2
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3
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1.5k
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any pipeline for small non coding RNA analysis from total RNA-seq
lhpRNA RNA-seq snRNA pipeline
3.9 years ago by lkianmehr ▴ 100
0
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1
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1.2k
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Answer: Answer: TE identification & classification via signal processing techniques?
3.9 years ago by lkianmehr ▴ 100
0
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1
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606
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How do I find the percentage of paired-end fastq files containing a given string
fastq bbduk
updated 3.9 years ago by 149k • written 3.9 years ago by ▴ 100
0
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1
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972
views
How to calculate the percentage of a repetitive motif in Fastq file
RNA-Seq sequence fastq bbtools
updated 4.8 years ago by 10k • written 4.8 years ago by ▴ 100
1
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1
reply
742
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quantify tRNA-derived fragments on RNA-seq data
RNA-Seq tRNA-derived fragments Salmon
4.9 years ago by lkianmehr ▴ 100
7
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8
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2.5k
views
6 follow
How do concatenate different fasta file
concatenate fasta
updated 5.1 years ago by • 0 • written 6.3 years ago by ▴ 100
1
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2
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855
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how should be coverage track of technical replicates of alignment visualization in BAM format?
IGV BAM visualization
5.5 years ago by lkianmehr ▴ 100
2
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1
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1.8k
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some questions to do GO enrichment analysis
Gene ontology RNA-seq Mouse
updated 5.6 years ago by 20 • written 6.1 years ago by ▴ 100
0
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1
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1.5k
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Comment: C: How to get proportion of specific sequence in fastq file
updated 6.0 years ago by 149k • written 6.0 years ago by ▴ 100
0
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1
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1.5k
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Comment: C: How to get proportion of specific sequence in fastq file
updated 6.0 years ago by 5.9k • written 6.0 years ago by ▴ 100
2
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5
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1.5k
views
How to get proportion of specific sequence in fastq file
specific sequence fastq RNA-Seq
updated 6.0 years ago by 8.7k • written 6.0 years ago by ▴ 100
0
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1
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2.1k
views
Comment: C: gene ontology analysis based on transcript biotype
6.1 years ago by lkianmehr ▴ 100
1
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3
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2.1k
views
gene ontology analysis based on transcript biotype
gene ontology transcript biotype
updated 6.1 years ago by 7.6k • written 6.1 years ago by ▴ 100
0
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1
reply
2.0k
views
how do normalization for transcript length
transcript coverage plot salmon tximport
6.1 years ago by lkianmehr ▴ 100
0
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1
reply
54k
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Comment: C: Gene Set Clustering based on Functional annotation (GeneSCF)
6.1 years ago by lkianmehr ▴ 100
0
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1
reply
54k
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Comment: C: Gene Set Clustering based on Functional annotation (GeneSCF)
6.1 years ago by lkianmehr ▴ 100
0
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1
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1.3k
views
Comment: C: how to get percent identity between two RNA-seq fastq files?
6.2 years ago by lkianmehr ▴ 100
2
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3
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1.3k
views
how to get percent identity between two RNA-seq fastq files?
percent identity RNA-seq
updated 6.2 years ago by 165k • written 6.2 years ago by ▴ 100
0
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3
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1.6k
views
repeatmask fasta file
repeatmask TEelements Salmon Index
updated 6.3 years ago by 20 • written 6.3 years ago by ▴ 100
0
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1
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2.7k
views
Comment: C: May I use numreads for doing DGE after quantifying by Salmon
6.3 years ago by lkianmehr ▴ 100
1
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6
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2.7k
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May I use numreads for doing DGE after quantifying by Salmon
Salmon DGE
updated 6.3 years ago by 47k • written 6.3 years ago by ▴ 100
0
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0
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1.6k
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Comment: C: repeatmask fasta file
6.3 years ago by lkianmehr ▴ 100
0
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0
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946
views
How can I find functional role and interactions between differential expressed transcripts
RNA-Seq transcript ontology ncRNA
6.3 years ago by lkianmehr ▴ 100
0
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1
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5.7k
views
Comment: C: cause of unmapped short with STAR
updated 6.3 years ago by 105k • written 6.3 years ago by ▴ 100
2
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5
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5.7k
views
cause of unmapped short with STAR
STAR RNA-Seq
updated 6.3 years ago by 14k • written 6.3 years ago by ▴ 100
0
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1
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3.2k
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Comment: C: Problem mapping mRNA seq data using STAR.
6.3 years ago by lkianmehr ▴ 100
0
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0
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2.3k
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Comment: C: which package should be selected for differential gene expression analysis
6.3 years ago by lkianmehr ▴ 100
4
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5
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2.3k
views
which package should be selected for differential gene expression analysis
Differential-gene-expression RNA-Seq
updated 10 months ago by 44k • written 6.3 years ago by ▴ 100
0
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1
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1.8k
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Comment: C: How do transcript-level gene ontology
6.3 years ago by lkianmehr ▴ 100
0
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3
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1.8k
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How do transcript-level gene ontology
geneontology transcript
6.3 years ago by lkianmehr ▴ 100
0
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0
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2.3k
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Comment: C: which package should be selected for differential gene expression analysis
6.3 years ago by lkianmehr ▴ 100
0
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0
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4.1k
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Comment: C: best pipeline to get gene and transcript counts
6.3 years ago by lkianmehr ▴ 100
0
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0
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4.1k
views
Comment: C: best pipeline to get gene and transcript counts
6.3 years ago by lkianmehr ▴ 100
0
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1
reply
4.1k
views
Comment: C: best pipeline to get gene and transcript counts
6.3 years ago by lkianmehr ▴ 100
0
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1
reply
4.1k
views
Comment: C: best pipeline to get gene and transcript counts
6.3 years ago by lkianmehr ▴ 100
2
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0
replies
4.4k
views
Comment: C: how do Differential gene expression analysis by Salmon output
6.3 years ago by lkianmehr ▴ 100
0
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0
replies
1.3k
views
Comment: C: how many index has to be constructed by STAR for TE analysis
6.3 years ago by lkianmehr ▴ 100
0
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1
reply
4.1k
views
Comment: C: best pipeline to get gene and transcript counts
6.3 years ago by lkianmehr ▴ 100
0
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1
reply
4.1k
views
Comment: C: best pipeline to get gene and transcript counts
6.3 years ago by lkianmehr ▴ 100
0
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1
reply
4.1k
views
Comment: C: best pipeline to get gene and transcript counts
6.3 years ago by lkianmehr ▴ 100
3
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14
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4.1k
views
best pipeline to get gene and transcript counts
RNA-Seq alignment count Hisat2 STAR
updated 6.3 years ago by ▴ 30 • written 6.3 years ago by ▴ 100
2
votes
2
replies
1.3k
views
how many index has to be constructed by STAR for TE analysis
TEToolkit STAR Index
updated 6.3 years ago by 35k • written 6.3 years ago by ▴ 100
5
votes
1
reply
2.0k
views
Quantifying repetitive elements in RNA-seqs
RNA-Seq repetitive elements quantification
updated 6.3 years ago by ★ 3.2k • written 6.3 years ago by ▴ 100
0
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0
replies
1.2k
views
Comment: C: Hisat2 alignment results can be ued for TEtoolkit analysis
6.3 years ago by lkianmehr ▴ 100
1
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3
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1.2k
views
Hisat2 alignment results can be ued for TEtoolkit analysis
Hisat2 TEtoolkit
updated 6.3 years ago by 35k • written 6.3 years ago by ▴ 100
0
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1
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4.4k
views
Comment: C: how do Differential gene expression analysis by Salmon output
6.4 years ago by lkianmehr ▴ 100
3
votes
6
replies
4.4k
views
how do Differential gene expression analysis by Salmon output
differential-gene-expression Salmon
updated 10 months ago by 44k • written 6.4 years ago by ▴ 100
0
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1
reply
5.7k
views
how specify feature type in featureCounts
featureCounts
updated 6.4 years ago by ★ 3.6k • written 6.4 years ago by ▴ 100
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