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Answer: Answer: Fragmented BUSCOs of genome assemblies - How to improve scores?
3 months ago by young_bioinformatician ▴ 240
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553
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Comment: Comment: Reformatting Merged and Unmerged Paired-End Files
8 months ago by young_bioinformatician ▴ 240
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3
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553
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Reformatting Merged and Unmerged Paired-End Files
illumina fastp fastqc bbmap
updated 8 months ago by 147k • written 8 months ago by ▴ 240
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5
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1.6k
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long view SNPs in vcf file
bcftools Variant-Calling SNP freebayes vcftools
updated 8 months ago by ▴ 10 • written 2.0 years ago by ▴ 240
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955
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Comment: Comment: Guided genome assembly
9 months ago by young_bioinformatician ▴ 240
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806
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Comment: Comment: eggNOG versus Diamond blastp
9 months ago by young_bioinformatician ▴ 240
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432
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Answer: Answer: Multimapped and unique mapped for BAM file of RRBS data
9 months ago by young_bioinformatician ▴ 240
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3
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806
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eggNOG versus Diamond blastp
diamond eggNOG protein functional
updated 9 months ago by ★ 2.8k • written 9 months ago by ▴ 240
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2
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818
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How to manage GO terms for metagenomics
metagenome gene-ontology GO
updated 9 months ago by ▴ 420 • written 2.1 years ago by ▴ 240
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1
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455
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Answer: Answer: move fasta and fastq files with the same name folder
9 months ago by young_bioinformatician ▴ 240
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1.3k
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Answer: Answer: How to produce "publication quality figures" for MAGs from environmental samples
10 months ago by young_bioinformatician ▴ 240
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2.5k
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Comment: Comment: How to speed Salmon index up
10 months ago by young_bioinformatician ▴ 240
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23
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2.5k
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How to speed Salmon index up
metagenome genome salmon
10 months ago by young_bioinformatician ▴ 240
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1
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2.5k
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Answer: Answer: How to speed Salmon index up
10 months ago by young_bioinformatician ▴ 240
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1
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2.5k
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Comment: Comment: How to speed Salmon index up
10 months ago by young_bioinformatician ▴ 240
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1
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2.5k
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Comment: Comment: How to speed Salmon index up
10 months ago by young_bioinformatician ▴ 240
0
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1
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2.5k
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Comment: Comment: How to speed Salmon index up
10 months ago by young_bioinformatician ▴ 240
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1
reply
2.5k
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Comment: Comment: How to speed Salmon index up
10 months ago by young_bioinformatician ▴ 240
0
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1
reply
2.5k
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Comment: Comment: How to speed Salmon index up
10 months ago by young_bioinformatician ▴ 240
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2
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2.5k
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Comment: Comment: How to speed Salmon index up
10 months ago by young_bioinformatician ▴ 240
0
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1
reply
2.5k
views
Comment: Comment: How to speed Salmon index up
10 months ago by young_bioinformatician ▴ 240
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0
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2.5k
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Comment: Comment: How to speed Salmon index up
10 months ago by young_bioinformatician ▴ 240
1
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2
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657
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Answer: Answer: Transcript Based Annotation of Variants Using Annovar
10 months ago by young_bioinformatician ▴ 240
2
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1
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1.2k
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Answer: Answer: How To Choose Metagenomics Function annotation : Reads-based v.s. Contigs-based
19 months ago by young_bioinformatician ▴ 240
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0
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406
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How to handle KEGG orthologous IDs involved multiple pathways
KEGG annotation metagenome functional gene
21 months ago by young_bioinformatician ▴ 240
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1
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1.0k
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Comment: Comment: Further Reducing Gene Ontology list
2.0 years ago by young_bioinformatician ▴ 240
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1.4k
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Comment: Comment: How to combine eggnog and interproscan
2.0 years ago by young_bioinformatician ▴ 240
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2
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1.4k
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How to combine eggnog and interproscan
pfam eggnog blast interproscan annotation
2.0 years ago by young_bioinformatician ▴ 240
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0
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3.9k
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Comment: Comment: Paired end reads merged to single end for mapping - should i allow multi-overlap
2.0 years ago by young_bioinformatician ▴ 240
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1.6k
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Comment: Comment: long view SNPs in vcf file
2.0 years ago by young_bioinformatician ▴ 240
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1.6k
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Comment: Comment: long view SNPs in vcf file
2.0 years ago by young_bioinformatician ▴ 240
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0
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786
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Comment: Comment: Change ploidy level in vcf file
updated 2.1 years ago by 2.9k • written 2.1 years ago by ▴ 240
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2
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786
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Change ploidy level in vcf file
vcf freebayes SNP vcftools bcftools
updated 2.1 years ago by 2.9k • written 2.1 years ago by ▴ 240
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0
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2.6k
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Comment: Comment: How to create a basic GUI for rna seq pipeline
2.1 years ago by young_bioinformatician ▴ 240
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1
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1.9k
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Comment: Comment: Fasta headers column spilt or selection
2.2 years ago by young_bioinformatician ▴ 240
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0
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791
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Comment: Comment: variant analysis using Freebayes
2.2 years ago by young_bioinformatician ▴ 240
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0
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1.1k
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Comment: Comment: Error loading a bam + bai files in IGV
2.2 years ago by young_bioinformatician ▴ 240
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0
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1.2k
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Comment: Comment: When to use Genome assembly and when to use short read alignment for consensus g
2.2 years ago by young_bioinformatician ▴ 240
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0
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2.3k
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Comment: Comment: PLINK - individual variance with the SNPs weights
2.2 years ago by young_bioinformatician ▴ 240
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1
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2.3k
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Comment: Comment: PLINK - individual variance with the SNPs weights
2.2 years ago by young_bioinformatician ▴ 240
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1
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2.3k
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Comment: Comment: PLINK - individual variance with the SNPs weights
2.2 years ago by young_bioinformatician ▴ 240
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6
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2.3k
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PLINK - individual variance with the SNPs weights
plink snp variant population pca
2.2 years ago by young_bioinformatician ▴ 240
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1
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990
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Comment: Comment: Normalization after Trimmomatic ?
2.4 years ago by young_bioinformatician ▴ 240
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0
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428
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How to (or not to) interpret the annotation abundance result from metagenome
gene abundance GO annotation metagenome
2.4 years ago by young_bioinformatician ▴ 240
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0
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1.3k
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Answer: Answer: MG RAST for Eukaryota
2.5 years ago by young_bioinformatician ▴ 240
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0
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857
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Comment: Comment: Considering two and more variation in polyploidy
2.5 years ago by young_bioinformatician ▴ 240
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1
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857
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Comment: Comment: Considering two and more variation in polyploidy
2.6 years ago by young_bioinformatician ▴ 240
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4
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857
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Considering two and more variation in polyploidy
Population SNP Variant genomic Calling
2.5 years ago by young_bioinformatician ▴ 240
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0
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854
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Comment: Comment: PCA biplot for SNPs data
2.7 years ago by young_bioinformatician ▴ 240
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2
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854
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PCA biplot for SNPs data
SNP Calling PCA Variant
2.7 years ago by young_bioinformatician ▴ 240
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