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Comparison of different gene catalog abundance
assembly catalog metagenome illumina gene
updated 4 months ago by ★ 2.0k • written 4 months ago by ▴ 240
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1
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688
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Answer: Answer: What is the interpretation of sequence enrichment in whole genome sequencing?
5 months ago by young_bioinformatician ▴ 240
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1.6k
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Answer: Answer: Fragmented BUSCOs of genome assemblies - How to improve scores?
9 months ago by young_bioinformatician ▴ 240
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1
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895
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Comment: Comment: Reformatting Merged and Unmerged Paired-End Files
15 months ago by young_bioinformatician ▴ 240
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3
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895
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Reformatting Merged and Unmerged Paired-End Files
illumina fastp fastqc bbmap
updated 15 months ago by 152k • written 15 months ago by ▴ 240
5
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5
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2.1k
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long view SNPs in vcf file
bcftools Variant-Calling SNP freebayes vcftools
updated 15 months ago by ▴ 10 • written 2.6 years ago by ▴ 240
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1.9k
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Comment: Comment: Guided genome assembly
16 months ago by young_bioinformatician ▴ 240
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1
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1.3k
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Comment: Comment: eggNOG versus Diamond blastp
16 months ago by young_bioinformatician ▴ 240
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0
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614
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Answer: Answer: Multimapped and unique mapped for BAM file of RRBS data
16 months ago by young_bioinformatician ▴ 240
2
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3
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1.3k
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eggNOG versus Diamond blastp
diamond eggNOG protein functional
updated 16 months ago by ★ 2.9k • written 16 months ago by ▴ 240
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2
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1.1k
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How to manage GO terms for metagenomics
metagenome gene-ontology GO
updated 16 months ago by ▴ 470 • written 2.7 years ago by ▴ 240
2
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1
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633
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Answer: Answer: move fasta and fastq files with the same name folder
16 months ago by young_bioinformatician ▴ 240
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0
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1.7k
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Answer: Answer: How to produce "publication quality figures" for MAGs from environmental samples
17 months ago by young_bioinformatician ▴ 240
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0
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4.0k
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Comment: Comment: How to speed Salmon index up
17 months ago by young_bioinformatician ▴ 240
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23
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4.0k
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How to speed Salmon index up
metagenome genome salmon
17 months ago by young_bioinformatician ▴ 240
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1
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4.0k
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Answer: Answer: How to speed Salmon index up
17 months ago by young_bioinformatician ▴ 240
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1
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4.0k
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Comment: Comment: How to speed Salmon index up
17 months ago by young_bioinformatician ▴ 240
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1
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4.0k
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Comment: Comment: How to speed Salmon index up
17 months ago by young_bioinformatician ▴ 240
0
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1
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4.0k
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Comment: Comment: How to speed Salmon index up
17 months ago by young_bioinformatician ▴ 240
0
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1
reply
4.0k
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Comment: Comment: How to speed Salmon index up
17 months ago by young_bioinformatician ▴ 240
0
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1
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4.0k
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Comment: Comment: How to speed Salmon index up
17 months ago by young_bioinformatician ▴ 240
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2
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4.0k
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Comment: Comment: How to speed Salmon index up
17 months ago by young_bioinformatician ▴ 240
0
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1
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4.0k
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Comment: Comment: How to speed Salmon index up
17 months ago by young_bioinformatician ▴ 240
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0
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4.0k
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Comment: Comment: How to speed Salmon index up
17 months ago by young_bioinformatician ▴ 240
1
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2
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902
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Answer: Answer: Transcript Based Annotation of Variants Using Annovar
17 months ago by young_bioinformatician ▴ 240
2
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1
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1.5k
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Answer: Answer: How To Choose Metagenomics Function annotation : Reads-based v.s. Contigs-based
2.1 years ago by young_bioinformatician ▴ 240
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0
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560
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How to handle KEGG orthologous IDs involved multiple pathways
KEGG annotation metagenome functional gene
2.3 years ago by young_bioinformatician ▴ 240
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1
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1.3k
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Comment: Comment: Further Reducing Gene Ontology list
2.6 years ago by young_bioinformatician ▴ 240
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0
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1.8k
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Comment: Comment: How to combine eggnog and interproscan
2.6 years ago by young_bioinformatician ▴ 240
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2
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1.8k
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How to combine eggnog and interproscan
pfam eggnog blast interproscan annotation
2.6 years ago by young_bioinformatician ▴ 240
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0
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4.3k
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Comment: Comment: Paired end reads merged to single end for mapping - should i allow multi-overlap
2.6 years ago by young_bioinformatician ▴ 240
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0
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2.1k
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Comment: Comment: long view SNPs in vcf file
2.6 years ago by young_bioinformatician ▴ 240
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0
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2.1k
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Comment: Comment: long view SNPs in vcf file
2.6 years ago by young_bioinformatician ▴ 240
0
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0
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992
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Comment: Comment: Change ploidy level in vcf file
updated 2.7 years ago by 2.9k • written 2.7 years ago by ▴ 240
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2
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992
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Change ploidy level in vcf file
vcf freebayes SNP vcftools bcftools
updated 2.7 years ago by 2.9k • written 2.7 years ago by ▴ 240
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0
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3.5k
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Comment: Comment: How to create a basic GUI for rna seq pipeline
2.7 years ago by young_bioinformatician ▴ 240
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1
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2.4k
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Comment: Comment: Fasta headers column spilt or selection
2.7 years ago by young_bioinformatician ▴ 240
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0
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989
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Comment: Comment: variant analysis using Freebayes
2.7 years ago by young_bioinformatician ▴ 240
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0
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1.4k
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Comment: Comment: Error loading a bam + bai files in IGV
2.7 years ago by young_bioinformatician ▴ 240
0
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0
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1.5k
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Comment: Comment: When to use Genome assembly and when to use short read alignment for consensus g
2.7 years ago by young_bioinformatician ▴ 240
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0
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2.9k
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Comment: Comment: PLINK - individual variance with the SNPs weights
2.7 years ago by young_bioinformatician ▴ 240
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1
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2.9k
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Comment: Comment: PLINK - individual variance with the SNPs weights
2.7 years ago by young_bioinformatician ▴ 240
0
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1
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2.9k
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Comment: Comment: PLINK - individual variance with the SNPs weights
2.7 years ago by young_bioinformatician ▴ 240
3
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6
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2.9k
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PLINK - individual variance with the SNPs weights
plink snp variant population pca
2.7 years ago by young_bioinformatician ▴ 240
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1
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1.2k
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Comment: Comment: Normalization after Trimmomatic ?
3.0 years ago by young_bioinformatician ▴ 240
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0
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534
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How to (or not to) interpret the annotation abundance result from metagenome
gene abundance GO annotation metagenome
3.0 years ago by young_bioinformatician ▴ 240
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0
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1.4k
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Answer: Answer: MG RAST for Eukaryota
3.1 years ago by young_bioinformatician ▴ 240
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0
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1.1k
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Comment: Comment: Considering two and more variation in polyploidy
3.1 years ago by young_bioinformatician ▴ 240
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1
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1.1k
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Comment: Comment: Considering two and more variation in polyploidy
3.1 years ago by young_bioinformatician ▴ 240
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4
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1.1k
views
Considering two and more variation in polyploidy
Population SNP Variant genomic Calling
3.1 years ago by young_bioinformatician ▴ 240
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