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5
votes
3
replies
8.9k
views
Genotype representation with 0, 1, 2 - what do they mean?
genotype representation phasing imputation gwas
updated 7 months ago by ▴ 10 • written 6.5 years ago by ▴ 180
1
vote
1
reply
588
views
Mapping gene coordinates to transcript exons
genes transcript positions exon
updated 2.7 years ago by 3.3k • written 2.7 years ago by ▴ 180
1
vote
2
replies
2.7k
views
Calculating frequencies of possible combinations of SNP genotypes in a population
genotype frequency allele
updated 3.2 years ago by • 0 • written 6.1 years ago by ▴ 180
2
votes
2
replies
877
views
Genotype imputation - do SNP IDs of input files and reference panels matter?
genotype SNP reference VCF imputation
updated 3.4 years ago by 2.9k • written 3.4 years ago by ▴ 180
19
votes
9
replies
21k
views
6 follow
Polygenic Risk Scores: Odds ratio or Beta-coefficient?
polygenic genetic risk score odds ratio
updated 3.4 years ago by ▴ 20 • written 6.2 years ago by ▴ 180
0
votes
1
reply
964
views
Multiple alleles in REF and ALT in VCF file
vcf allele indel bcftools vcftools
updated 3.7 years ago by 20 • written 3.8 years ago by ▴ 180
4
votes
3
replies
2.7k
views
Michigan Imputation Server - typed-only sites?
imputation SNP genotyping michigan vcf
updated 3.8 years ago by • 0 • written 4.7 years ago by ▴ 180
0
votes
1
reply
1.5k
views
Comment: C: VCF files - how to handle entries with identical ID but different positions and
4.7 years ago by Volka ▴ 180
0
votes
1
reply
1.5k
views
Comment: C: VCF files - how to handle entries with identical ID but different positions and
4.7 years ago by Volka ▴ 180
1
vote
6
replies
1.5k
views
VCF files - how to handle entries with identical ID but different positions and alleles?
Sanger duplicate VCF ID allele
4.7 years ago by Volka ▴ 180
14
votes
7
replies
7.6k
views
Running ANOVA in R on three tables of gene expression data
anova RNA-Seq microarray gene expression
updated 4.7 years ago by ▴ 10 • written 6.3 years ago by ▴ 180
0
votes
0
replies
2.7k
views
Comment: C: Calculating frequencies of possible combinations of SNP genotypes in a populatio
6.1 years ago by Volka ▴ 180
2
votes
2
replies
1.8k
views
Method to get all possible combinations of genotypes for a group of SNPs
combination genotype permutation python R
updated 6.1 years ago by ▴ 850 • written 6.1 years ago by ▴ 180
1
vote
3
replies
1.5k
views
How do microarray manufacturers decide on the number of probe pairs in a probeset?
Affymetrix microarray probe pair probeset
updated 6.2 years ago by ★ 2.0k • written 6.3 years ago by ▴ 180
0
votes
1
reply
3.4k
views
Comment: C: What is a faster way than using bcftool's view to extract a population from 1000
6.2 years ago by Volka ▴ 180
0
votes
1
reply
3.4k
views
Comment: C: What is a faster way than using bcftool's view to extract a population from 1000
6.2 years ago by Volka ▴ 180
2
votes
5
replies
3.4k
views
What is a faster way than using bcftool's view to extract a population from 1000 Genome VCF files?
bcftools 1000 vcf subset extract
updated 6.2 years ago by 11k • written 6.2 years ago by ▴ 180
0
votes
1
reply
7.6k
views
Comment: C: Running ANOVA in R on three tables of gene expression data
6.2 years ago by Volka ▴ 180
0
votes
1
reply
7.6k
views
Comment: C: Running ANOVA in R on three tables of gene expression data
6.3 years ago by Volka ▴ 180
0
votes
1
reply
1.3k
views
Comment: C: Do gene expression microarrays cover all genes in the transcriptome?
6.3 years ago by Volka ▴ 180
0
votes
4
replies
1.3k
views
Do gene expression microarrays cover all genes in the transcriptome?
affymetrix microarray gene transcript
6.3 years ago by Volka ▴ 180
0
votes
1
reply
1.4k
views
Need some help interpreting Michigan Server Imputation output statistics
chromosome x imputation michigan SNP genotype
6.3 years ago by Volka ▴ 180
4
votes
3
replies
1.4k
views
Microarray Probesets Quality Control - Why exclude non-autosomal probesets?
microarray quality control autosomes probesets
updated 6.5 years ago by 104k • written 6.5 years ago by ▴ 180
0
votes
0
replies
1.4k
views
Comment: C: Microarray Probesets Quality Control - Why exclude non-autosomal probesets?
6.5 years ago by Volka ▴ 180
2
votes
1
reply
4.0k
views
SNP pruning - Linkage disequilibrium measure, r2 (0.2), and minor allele frequency (0.05), why these values?
linkage disequilibrium minor allele frequency
updated 6.5 years ago by 88k • written 6.5 years ago by ▴ 180
6
votes
2
replies
2.7k
views
Plink sex check - why would female calls have more than 0 nonmissing Y genotypes?
plink gwas sex check
6.5 years ago by Volka ▴ 180
0
votes
1
reply
1.2k
views
Comment: C: More efficient way than zipping arrays for transposing a FinalReport table in Py
6.6 years ago by Volka ▴ 180
0
votes
4
replies
1.2k
views
More efficient way than zipping arrays for transposing a FinalReport table in Python?
python snp genome
6.6 years ago by Volka ▴ 180
28 results • Page 1 of 1
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