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535
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Comment: Comment: Metagenomics/amplicon sequencing: Most publicly available data already host remo
4 weeks ago by shenwei356 8.7k
0
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0
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595
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Comment: Comment: Help with seqkit sort increasing file size in multifasta
4 months ago by shenwei356 8.7k
1
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0
replies
595
views
Comment: Comment: Help with seqkit sort increasing file size in multifasta
4 months ago by shenwei356 8.7k
0
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0
replies
451
views
Comment: Comment: Question about seqkit sort function
4 months ago by shenwei356 8.7k
1
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0
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654
views
Comment: Comment: Is there an elegant way to deal with the version indicator in reference FASTA fi
5 months ago by shenwei356 8.7k
2
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1
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654
views
Comment: Comment: Is there an elegant way to deal with the version indicator in reference FASTA fi
5 months ago by shenwei356 8.7k
0
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0
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473
views
Comment: Comment: Is there an easy way to scrape a whole bunch of NCBI RefSeq FASTA from NCBI?
5 months ago by shenwei356 8.7k
1
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0
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476
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Comment: Comment: how to order paired-end reads to use in kaiju?
6 months ago by shenwei356 8.7k
1
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1
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882
views
Comment: Comment: Remote BLASTx : Strain specific search.
7 months ago by shenwei356 8.7k
0
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1
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854
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Comment: Comment: Nr Database just for Prokaryotes
7 months ago by shenwei356 8.7k
2
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0
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701
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Answer: Answer: Rapid K-mer search
7 months ago by shenwei356 8.7k
0
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0
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1.1k
views
Comment: Comment: How to check if all read names are paired properly in paired end fastq.gz files?
8 months ago by shenwei356 8.7k
0
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0
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633
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Comment: Comment: Empty txt file as an output of "seqkit stats" for multiple fastq files
9 months ago by shenwei356 8.7k
1
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0
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10k
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Comment: Comment: how to split multi-fasta file into single fasta file named by header
9 months ago by shenwei356 8.7k
1
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0
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765
views
Comment: Comment: Construction of a phylogentic tree for thousands of bacterial genomes
9 months ago by shenwei356 8.7k
1
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1
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851
views
Comment: Comment: assemble extracted kmers into longer contigs/sequences
9 months ago by shenwei356 8.7k
2
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1
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851
views
Answer: Answer: assemble extracted kmers into longer contigs/sequences
9 months ago by shenwei356 8.7k
1
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0
replies
696
views
Comment: Comment: Publish a Letter in higher impact vs Research article in lower impact
10 months ago by shenwei356 8.7k
3
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1
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2.3k
views
Answer: Answer: Bacterial plasmid analysis
11 months ago by shenwei356 8.7k
0
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0
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1.3k
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Comment: Comment: Rename multiple fastq.gz files
11 months ago by shenwei356 8.7k
0
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0
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1.7k
views
Comment: Comment: Removing adapter/primer sequence from reads while keeping flanking regions
12 months ago by shenwei356 8.7k
1
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2
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1.7k
views
Answer: Answer: Removing adapter/primer sequence from reads while keeping flanking regions
12 months ago by shenwei356 8.7k
0
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0
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957
views
Comment: Comment: Parsing fasta file by coordinates
12 months ago by shenwei356 8.7k
1
vote
1
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829
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Comment: Comment: Seqkit Replace
12 months ago by shenwei356 8.7k
2
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1
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829
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Answer: Answer: Seqkit Replace
12 months ago by shenwei356 8.7k
2
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1
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1.4k
views
Comment: Comment: Max lenght reads from fastq
13 months ago by shenwei356 8.7k
0
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0
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427
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Comment: Comment: Conda appears different than yesterday
14 months ago by shenwei356 8.7k
0
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0
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1.2k
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Comment: Comment: Blastn for all bacteria genomes; create the db
14 months ago by shenwei356 8.7k
0
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1
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1.2k
views
Answer: Answer: Blastn for all bacteria genomes; create the db
14 months ago by shenwei356 8.7k
7
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5
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5.5k
views
How to get consensus FASTA sequence from GFA assembly graph?
gfa consensus
updated 14 months ago by ▴ 40 • written 6.3 years ago by 8.7k
0
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0
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385
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Comment: Comment: Calculating percentage of reads mapped to a reference genome
14 months ago by shenwei356 8.7k
3
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1
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1.5k
views
Answer: Answer: Renaming fasta files with their headers
15 months ago by shenwei356 8.7k
0
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1
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1.1k
views
Comment: Comment: Species coverage in the NCBI protein NR database ?
16 months ago by shenwei356 8.7k
0
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0
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1.1k
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Comment: Comment: Species coverage in the NCBI protein NR database ?
16 months ago by shenwei356 8.7k
5
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0
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1.1k
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Answer: Answer: how to sort fasta file accroding to header
16 months ago by shenwei356 8.7k
0
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1
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2.9k
views
Comment: Comment: How to limit fasta header to 40 characters?
19 months ago by shenwei356 8.7k
13
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6
replies
6.2k
views
Tool: csvtk - a cross-platform, efficient, practical and pretty CSV/TSV toolkit
CSV Golang TSV
19 months ago by shenwei356 8.7k
1
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0
replies
6.2k
views
Answer: Answer: csvtk - a cross-platform, efficient, practical and pretty CSV/TSV toolkit
19 months ago by shenwei356 8.7k
0
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0
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27k
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Comment: Comment: searching reads with a certain sequence in fastq file
20 months ago by shenwei356 8.7k
0
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1
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791
views
Answer: Answer: Question about sequence alignment
21 months ago by shenwei356 8.7k
3
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0
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1.4k
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Answer: Answer: How to extract sequences from multiple fastq files based on a certain sequence
21 months ago by shenwei356 8.7k
2
votes
0
replies
1.5k
views
Answer: Answer: Bash solution to replace part of FASTA headers witch contain matching values in
21 months ago by shenwei356 8.7k
1
vote
0
replies
3.7k
views
Answer: Answer: Getting sequences from fastq file using Grep command
21 months ago by shenwei356 8.7k
2
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0
replies
1.0k
views
Answer: Answer: how to sort unique seq from fasta files
22 months ago by shenwei356 8.7k
0
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1
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17k
views
Comment: Comment: How to concatenate multiple fasta file
22 months ago by shenwei356 8.7k
2
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1
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2.0k
views
Comment: Comment: how to use nohup with parallel
22 months ago by shenwei356 8.7k
0
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1
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1.6k
views
Answer: Answer: Add a genome to a kraken library
22 months ago by shenwei356 8.7k
2
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0
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729
views
Answer: Answer: Randomly reduce size of reads but preserving the distribution
23 months ago by shenwei356 8.7k
4
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1
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3.2k
views
Answer: Answer: Compare two very close genomes (.fasta)
24 months ago by shenwei356 8.7k
1
vote
1
reply
970
views
Answer: Answer: How to identify Gap location
24 months ago by shenwei356 8.7k
779 results • Page 1 of 16
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