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4
votes
6
replies
2.2k
views
Sciclone took too long
sciclone
updated 3.1 years ago by 148k • written 6.6 years ago by ▴ 90
0
votes
1
reply
1.5k
views
BAF without normal control, to do or not! or how
cnvkit BAF no controls TheTA2 TheTA
updated 5.3 years ago by • 0 • written 5.4 years ago by ▴ 90
2
votes
1
reply
2.7k
views
Why there is a 50% variant allele frequency in TCGA NSCLC data?
TCGA VAF Variant alle frequency somatic snv
5.4 years ago by sm.hashemin ▴ 90
1
vote
0
replies
2.7k
views
Answer: A: Why there is a 50% variant allele frequency in TCGA NSCLC data?
5.4 years ago by sm.hashemin ▴ 90
4
votes
4
replies
3.0k
views
cnvkit bgzf_read error 4 after 4 bytes
cnvkit bzip samtools
updated 5.4 years ago by ★ 2.8k • written 5.4 years ago by ▴ 90
0
votes
0
replies
3.0k
views
Comment: C: cnvkit bgzf_read error 4 after 4 bytes
5.4 years ago by sm.hashemin ▴ 90
1
vote
2
replies
1.5k
views
Does sciClone work on mouse exome data?
sciclone clonevol
updated 5.6 years ago by 20 • written 6.5 years ago by ▴ 90
0
votes
0
replies
2.2k
views
Comment: C: How to create a covariate file for MutSigCV using gene expression values from ot
5.9 years ago by sm.hashemin ▴ 90
0
votes
1
reply
4.9k
views
Comment: C: Visualizing CNV data based from bed or bedgraph format
5.9 years ago by sm.hashemin ▴ 90
0
votes
0
replies
4.9k
views
Answer: A: Visualizing CNV data based from bed or bedgraph format
5.9 years ago by sm.hashemin ▴ 90
4
votes
6
replies
4.9k
views
Visualizing CNV data based from bed or bedgraph format
CNV IGV R bed bedgraph
5.9 years ago by sm.hashemin ▴ 90
1
vote
0
replies
1.4k
views
Comment: C: regions with very different VAF fall into one cluster
5.9 years ago by sm.hashemin ▴ 90
0
votes
0
replies
8.5k
views
Comment: C: plot a bedgraph
5.9 years ago by sm.hashemin ▴ 90
4
votes
4
replies
1.4k
views
regions with very different VAF fall into one cluster
sciclone
updated 6.0 years ago by 22k • written 6.2 years ago by ▴ 90
1
vote
0
replies
1.4k
views
Comment: A: regions with very different VAF fall into one cluster
6.0 years ago by sm.hashemin ▴ 90
0
votes
0
replies
7.6k
views
Comment: Comment: Tumor clonality algorithms
updated 2.0 years ago by 44k • written 6.3 years ago by ▴ 90
0
votes
0
replies
12k
views
Comment: C: How to add custom fields to the VCF files?
6.3 years ago by sm.hashemin ▴ 90
0
votes
1
reply
12k
views
Answer: A: How to add custom fields to the VCF files?
6.3 years ago by sm.hashemin ▴ 90
0
votes
1
reply
1.1k
views
What is a good way to compare the WES and panel seq results from the same set of samples?
exome sequencing VCF Panel-seq
updated 6.3 years ago by ★ 2.3k • written 6.3 years ago by ▴ 90
0
votes
0
replies
253k
views
Comment: C: Tools To Calculate Average Coverage For A Bam File?
6.3 years ago by sm.hashemin ▴ 90
0
votes
1
reply
3.8k
views
Comment: C: How to add sample name to the VCF files
6.4 years ago by sm.hashemin ▴ 90
0
votes
1
reply
3.8k
views
Comment: C: How to add sample name to the VCF files
6.4 years ago by sm.hashemin ▴ 90
0
votes
5
replies
3.8k
views
How to add sample name to the VCF files
PLINK VCF BCFtools VCFtools lofreq
6.4 years ago by sm.hashemin ▴ 90
0
votes
0
replies
1.5k
views
Comment: C: Does sciClone work on mouse exome data?
6.5 years ago by sm.hashemin ▴ 90
0
votes
2
replies
2.2k
views
Comment: A: Sciclone took too long
6.6 years ago by sm.hashemin ▴ 90
0
votes
0
replies
3.4k
views
Comment: C: Bcftools view. FREQ inclusion error.
6.6 years ago by sm.hashemin ▴ 90
2
votes
2
replies
3.4k
views
Sciclone clonevol integration
sciclone clonevol
updated 6.6 years ago by 22k • written 6.6 years ago by ▴ 90
2
votes
2
replies
1.2k
views
Can sciclone handle multiallelic variants?
sciclone multiallelic_variants
updated 6.6 years ago by 22k • written 6.6 years ago by ▴ 90
3
votes
1
reply
3.4k
views
Answer: A: Bcftools view. FREQ inclusion error.
updated 6.6 years ago by 88k • written 6.6 years ago by ▴ 90
0
votes
0
replies
3.4k
views
Comment: C: Bcftools view. FREQ inclusion error.
updated 6.6 years ago by 88k • written 6.6 years ago by ▴ 90
0
votes
0
replies
5.7k
views
Comment: C: How to convert bam-readcount output to BED-VAF format
6.6 years ago by sm.hashemin ▴ 90
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