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Comment: Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
6 months ago by sovrappensiero ▴ 100
0
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Comment: Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
6 months ago by sovrappensiero ▴ 100
0
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1
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1.1k
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Comment: Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
6 months ago by sovrappensiero ▴ 100
0
votes
1
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1.1k
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Comment: Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
6 months ago by sovrappensiero ▴ 100
3
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8
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1.1k
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Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA2 - where to go from here?
nf-core 16S amplicon dada2 ampliseq
updated 6 months ago by ▴ 420 • written 6 months ago by ▴ 100
0
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0
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687
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Comment: Comment: 16S amplicon sequencing input data (spreadsheet): barcode vs. linker primer seqs
11 months ago by sovrappensiero ▴ 100
1
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2
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687
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16S amplicon sequencing input data (spreadsheet): barcode vs. linker primer seqs?
barcode amplicon 16s
11 months ago by sovrappensiero ▴ 100
1
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0
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1.8k
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Comment: Comment: Where do find virulence gene information in a gff/gtf file?
20 months ago by sovrappensiero ▴ 100
1
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0
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1.8k
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Comment: Comment: Where do find virulence gene information in a gff/gtf file?
20 months ago by sovrappensiero ▴ 100
1
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0
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1.8k
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Comment: Comment: Where do find virulence gene information in a gff/gtf file?
20 months ago by sovrappensiero ▴ 100
17
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8
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1.8k
views
Where do find virulence gene information in a gff/gtf file?
microbial genomics gff annotation gtf
20 months ago by sovrappensiero ▴ 100
1
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1
reply
1.0k
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Comment: Comment: Simulating metatranscriptomic shotgun reads
21 months ago by sovrappensiero ▴ 100
5
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5
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1.0k
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Simulating metatranscriptomic shotgun reads
metatranscriptomic RNA simulated-reads shotgun-sequencing
updated 21 months ago by ★ 28k • written 21 months ago by ▴ 100
0
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0
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1.0k
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Comment: Comment: Simulating metatranscriptomic shotgun reads
21 months ago by sovrappensiero ▴ 100
0
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0
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8.2k
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Comment: Comment: Randomize Read Order In Multigbp Fastq File?
21 months ago by sovrappensiero ▴ 100
0
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1
reply
855
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Comment: Comment: biological vs. technical definition of "insert size"
21 months ago by sovrappensiero ▴ 100
2
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3
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855
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biological vs. technical definition of "insert size"
grinder simulated-reads shotgun-sequencing
updated 21 months ago by 85k • written 21 months ago by ▴ 100
0
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1
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1.1k
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Comment: Comment: Alternative to NCBI nt for MEGAN-LR?
2.6 years ago by sovrappensiero ▴ 100
0
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4
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1.1k
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Alternative to NCBI nt for MEGAN-LR?
taxonomy database pacbio index smrt
updated 2.6 years ago by ▴ 40 • written 2.6 years ago by ▴ 100
6
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7
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3.8k
views
kallisto "gene" counts
gtf rna-seq kallisto
updated 2.4 years ago by 44k • written 2.6 years ago by ▴ 100
0
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1
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3.8k
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Comment: Comment: kallisto "gene" counts
2.6 years ago by sovrappensiero ▴ 100
1
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0
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3.6k
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Comment: Comment: Secrets to finding metadata on SRA data?
2.7 years ago by sovrappensiero ▴ 100
1
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2
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3.6k
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Comment: Comment: Secrets to finding metadata on SRA data?
2.7 years ago by sovrappensiero ▴ 100
0
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0
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3.6k
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Comment: Comment: Secrets to finding metadata on SRA data?
2.7 years ago by sovrappensiero ▴ 100
0
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1
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3.6k
views
Comment: Comment: Secrets to finding metadata on SRA data?
2.7 years ago by sovrappensiero ▴ 100
5
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12
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3.6k
views
Secrets to finding metadata on SRA data?
metadata sra ncbi biosample bioproject
updated 2.7 years ago by 22k • written 2.7 years ago by ▴ 100
0
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0
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675
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NCBI EUtils: identifying projects with both NGS and Sanger sequencing
ncbi eutils data type
4.1 years ago by sovrappensiero ▴ 100
0
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1
reply
2.7k
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Comment: C: Elink to get PMID associated with a BioProject or SRA entry
4.1 years ago by sovrappensiero ▴ 100
0
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0
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2.7k
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Comment: C: Elink to get PMID associated with a BioProject or SRA entry
4.1 years ago by sovrappensiero ▴ 100
0
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0
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2.7k
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Comment: C: Elink to get PMID associated with a BioProject or SRA entry
4.1 years ago by sovrappensiero ▴ 100
0
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2
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2.7k
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Comment: C: Elink to get PMID associated with a BioProject or SRA entry
4.1 years ago by sovrappensiero ▴ 100
7
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11
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2.7k
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Elink to get PMID associated with a BioProject or SRA entry
eutils ncbi bioproject pmid pubmed
updated 4.1 years ago by 101k • written 4.1 years ago by ▴ 100
0
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1
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7.2k
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Comment: C: How to download oxford nanopore sequencing fast5 files from SRA
4.1 years ago by sovrappensiero ▴ 100
0
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0
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2.0k
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Comment: C: Entrez Direct E-utilities on command line: efilter parameters for limiting efetc
5.0 years ago by sovrappensiero ▴ 100
0
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1
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1.3k
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Comment: C: primersearch Illegal character '/' error: EMBOSS An error in primersearch.c at
5.0 years ago by sovrappensiero ▴ 100
1
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3
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1.3k
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primersearch Illegal character '/' error: EMBOSS An error in primersearch.c at line 499
primersearch emboss error warning
5.0 years ago by sovrappensiero ▴ 100
0
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1
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2.0k
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Comment: C: Entrez Direct E-utilities on command line: efilter parameters for limiting efetc
5.0 years ago by sovrappensiero ▴ 100
2
votes
7
replies
2.0k
views
Entrez Direct E-utilities on command line: efilter parameters for limiting efetch results
ncbi efilter efetch elink biosample
updated 5.0 years ago by 147k • written 5.0 years ago by ▴ 100
0
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1
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2.0k
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Comment: C: Entrez Direct E-utilities on command line: efilter parameters for limiting efetc
5.0 years ago by sovrappensiero ▴ 100
1
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0
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11k
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Comment: C: Normalization scaling factors: formula for applying them to raw counts
6.5 years ago by sovrappensiero ▴ 100
5
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4
replies
11k
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Normalization scaling factors: formula for applying them to raw counts
normalization edgeR DESeq2 R
6.5 years ago by sovrappensiero ▴ 100
0
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0
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2.6k
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Comment: C: Normalization amplicon data using mean depth and coverage
6.5 years ago by sovrappensiero ▴ 100
0
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1
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2.6k
views
Comment: C: Normalization amplicon data using mean depth and coverage
6.5 years ago by sovrappensiero ▴ 100
0
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1
reply
2.6k
views
Comment: C: Normalization amplicon data using mean depth and coverage
6.5 years ago by sovrappensiero ▴ 100
0
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1
reply
2.6k
views
Comment: C: Normalization amplicon data using mean depth and coverage
6.5 years ago by sovrappensiero ▴ 100
0
votes
8
replies
2.6k
views
Normalization amplicon data using mean depth and coverage
normalization amplicon depth coverage
6.5 years ago by sovrappensiero ▴ 100
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