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Comment: Comment: 99.9999% of Q30 bases is normal?
7 months ago by MatthewP ★ 1.4k
0
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1
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637
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Comment: Comment: A c library for reading and writing sequences in fasta and fastq format.
8 months ago by MatthewP ★ 1.4k
1
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2
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1.9k
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Comment: Comment: Some lines are not well organized in BED file, how to correct them ? Thanks a lo
10 months ago by MatthewP ★ 1.4k
0
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0
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5.3k
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Comment: Comment: Should I use the basecaller Dorado to analyze my Nanopore Data?
11 months ago by MatthewP ★ 1.4k
0
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0
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666
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Comment: Comment: MSA using ggtree msaplot
11 months ago by MatthewP ★ 1.4k
10
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6
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6.8k
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How to create interval list from reference fasta or dict file?
GATK
updated 11 months ago by ▴ 110 • written 3.8 years ago by ★ 1.4k
2
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1
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631
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Answer: Answer: Help with gatk CreateSequenceDictionary
updated 11 months ago by 147k • written 11 months ago by ★ 1.4k
0
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0
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712
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Comment: Comment: ANNOVAR Error: All variants in a VCF register as "invalid genotype records in in
12 months ago by MatthewP ★ 1.4k
0
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1
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712
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Comment: Comment: ANNOVAR Error: All variants in a VCF register as "invalid genotype records in in
12 months ago by MatthewP ★ 1.4k
0
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0
replies
1.3k
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Comment: Comment: What is the new Entrez login for NCBI API?
13 months ago by MatthewP ★ 1.4k
0
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0
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745
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Comment: Comment: How to deal with reads which CIGAR is [0-9]+S
13 months ago by MatthewP ★ 1.4k
0
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0
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742
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Comment: Comment: What is a tool to get the genome build of a VCF?
13 months ago by MatthewP ★ 1.4k
1
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1
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1.2k
views
Comment: Comment: how to solve the problem "Invalid character (+) in sequence"
15 months ago by MatthewP ★ 1.4k
1
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1
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1.2k
views
Comment: Comment: How to make chromVAR plot?
16 months ago by MatthewP ★ 1.4k
0
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1
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1.3k
views
Comment: Comment: All question mark quality scores on several studies
17 months ago by MatthewP ★ 1.4k
0
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1
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1.3k
views
Comment: Comment: All question mark quality scores on several studies
17 months ago by MatthewP ★ 1.4k
0
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0
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1.5k
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Comment: Comment: OTU, ASV and Kraken2
17 months ago by MatthewP ★ 1.4k
0
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1
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1.3k
views
Comment: Comment: All question mark quality scores on several studies
17 months ago by MatthewP ★ 1.4k
0
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1
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2.7k
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Comment: Comment: End to End Solution for Multiple Sequence Alignment on Fasta Files in Python
17 months ago by MatthewP ★ 1.4k
1
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0
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527
views
Comment: Comment: weird behaviour on bedtools
18 months ago by MatthewP ★ 1.4k
2
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1
reply
1.6k
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Answer: Answer: how to use nohup with parallel
18 months ago by MatthewP ★ 1.4k
0
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0
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924
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Answer: Answer: Can we get fastq read id of certain species that kraken assigned?
18 months ago by MatthewP ★ 1.4k
0
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0
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816
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Comment: Comment: Comparing variant calls
19 months ago by MatthewP ★ 1.4k
0
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1
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3.7k
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Comment: Comment: gseKEGG - no gene can be mapped (RNAseq analysis)
21 months ago by MatthewP ★ 1.4k
0
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1
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1.9k
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Comment: Comment: R:scheduled cores 1, 5 did not deliver results
21 months ago by MatthewP ★ 1.4k
1
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1
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739
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Answer: Answer: Multiple sequence alignment of mtDNA HV1-3 in R
21 months ago by MatthewP ★ 1.4k
0
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0
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3.3k
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Comment: Comment: MSA visualization python package for sequence analysis
2.0 years ago by MatthewP ★ 1.4k
0
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0
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999
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Comment: Comment: How can Biostrings calculate consensus sequence without counting gaps?
2.1 years ago by MatthewP ★ 1.4k
0
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2
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999
views
How can Biostrings calculate consensus sequence without counting gaps?
Biostrings alignment
2.1 years ago by MatthewP ★ 1.4k
2
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1
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1.0k
views
Comment: Comment: HISAT2 running issue (output getting slower)
2.2 years ago by MatthewP ★ 1.4k
4
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0
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1.3k
views
Answer: Answer: Loading reference genome from BSgenome
2.3 years ago by MatthewP ★ 1.4k
2
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3
replies
3.2k
views
How to keep sample name while using samtools mpileup + varscan to do variant call?
samtools mpileup varscan
updated 2.3 years ago by 147k • written 6.4 years ago by ★ 1.4k
0
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1
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1.9k
views
Comment: Comment: Set up conda rna seq analysis
2.4 years ago by MatthewP ★ 1.4k
0
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1
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1.9k
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Comment: Comment: Set up conda rna seq analysis
2.4 years ago by MatthewP ★ 1.4k
1
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1
reply
1.9k
views
Comment: Comment: bowtie2 error "Unable to read file magic number"
2.4 years ago by MatthewP ★ 1.4k
0
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0
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1.3k
views
Comment: Comment: How to handle 2 peaks in fastQC GC plot...
2.5 years ago by MatthewP ★ 1.4k
2
votes
5
replies
3.1k
views
Some questions about call variants for mtDNA using GATK HaplotypeCaller
GATK HaplotypeCaller mtDNA
updated 2.6 years ago by ▴ 160 • written 6.2 years ago by ★ 1.4k
0
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0
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1.1k
views
Comment: Comment: featureCounts stuck
2.7 years ago by MatthewP ★ 1.4k
0
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1
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2.2k
views
Comment: Comment: How to do pathway enrichment analysis with genomic ranges data (ATAC-Seq peaks)?
2.8 years ago by MatthewP ★ 1.4k
4
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5
replies
2.2k
views
How to do pathway enrichment analysis with genomic ranges data (ATAC-Seq peaks)?
ATAC-Seq pathway annotation
updated 2.7 years ago by 4.5k • written 2.8 years ago by ★ 1.4k
1
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0
replies
3.4k
views
Comment: Comment: DiffBind missing peaks and FRiP
2.8 years ago by MatthewP ★ 1.4k
0
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0
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393
views
Do I need to remove ATAC-Seq large peaks?
ATAC-Seq Genrich
2.9 years ago by MatthewP ★ 1.4k
0
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0
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1.9k
views
Comment: Comment: Bedtools genomecov - Bam to bedgraph conversion
3.0 years ago by MatthewP ★ 1.4k
1
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0
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3.3k
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Answer: Answer: Interpreting GISTIC2 output
3.0 years ago by MatthewP ★ 1.4k
0
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0
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1.8k
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Answer: Answer: GATK Mutect2 errors during basic variant calling
3.0 years ago by MatthewP ★ 1.4k
0
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1
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1.7k
views
Comment: Comment: Best practice for running GATK VQSR on X chromosome
3.0 years ago by MatthewP ★ 1.4k
0
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1
reply
2.1k
views
Comment: Comment: featureCounts low annotation rate RNA-seq
3.1 years ago by MatthewP ★ 1.4k
0
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1
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2.1k
views
Comment: Comment: featureCounts low annotation rate RNA-seq
3.1 years ago by MatthewP ★ 1.4k
0
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1
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2.1k
views
Answer: Answer: featureCounts low annotation rate RNA-seq
3.1 years ago by MatthewP ★ 1.4k
0
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0
replies
1.7k
views
Answer: Answer: How maftools oncoplot classifies variant classifications
3.1 years ago by MatthewP ★ 1.4k
274 results • Page 1 of 6
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