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Comment: Comment: 99.9999% of Q30 bases is normal?
14 months ago by MatthewP ★ 1.4k
1
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2
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1.7k
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Comment: Comment: A c library for reading and writing sequences in fasta and fastq format.
15 months ago by MatthewP ★ 1.4k
1
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2
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3.3k
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Comment: Comment: Some lines are not well organized in BED file, how to correct them ? Thanks a lo
17 months ago by MatthewP ★ 1.4k
0
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0
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8.8k
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Comment: Comment: Should I use the basecaller Dorado to analyze my Nanopore Data?
18 months ago by MatthewP ★ 1.4k
0
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0
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908
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Comment: Comment: MSA using ggtree msaplot
18 months ago by MatthewP ★ 1.4k
10
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6
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7.9k
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How to create interval list from reference fasta or dict file?
GATK
updated 18 months ago by ▴ 110 • written 4.4 years ago by ★ 1.4k
2
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1
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896
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Answer: Answer: Help with gatk CreateSequenceDictionary
updated 18 months ago by 152k • written 18 months ago by ★ 1.4k
0
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0
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991
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Comment: Comment: ANNOVAR Error: All variants in a VCF register as "invalid genotype records in in
19 months ago by MatthewP ★ 1.4k
0
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1
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991
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Comment: Comment: ANNOVAR Error: All variants in a VCF register as "invalid genotype records in in
19 months ago by MatthewP ★ 1.4k
0
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0
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1.9k
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Comment: Comment: What is the new Entrez login for NCBI API?
20 months ago by MatthewP ★ 1.4k
0
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0
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1.0k
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Comment: Comment: How to deal with reads which CIGAR is [0-9]+S
20 months ago by MatthewP ★ 1.4k
0
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0
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939
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Comment: Comment: What is a tool to get the genome build of a VCF?
20 months ago by MatthewP ★ 1.4k
1
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1
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1.7k
views
Comment: Comment: how to solve the problem "Invalid character (+) in sequence"
22 months ago by MatthewP ★ 1.4k
1
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1
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1.5k
views
Comment: Comment: How to make chromVAR plot?
23 months ago by MatthewP ★ 1.4k
0
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1
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1.6k
views
Comment: Comment: All question mark quality scores on several studies
2.0 years ago by MatthewP ★ 1.4k
0
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1
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1.6k
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Comment: Comment: All question mark quality scores on several studies
2.0 years ago by MatthewP ★ 1.4k
0
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0
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2.1k
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Comment: Comment: OTU, ASV and Kraken2
2.0 years ago by MatthewP ★ 1.4k
0
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1
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1.6k
views
Comment: Comment: All question mark quality scores on several studies
2.0 years ago by MatthewP ★ 1.4k
0
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1
reply
3.9k
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Comment: Comment: End to End Solution for Multiple Sequence Alignment on Fasta Files in Python
2.0 years ago by MatthewP ★ 1.4k
1
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0
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705
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Comment: Comment: weird behaviour on bedtools
2.1 years ago by MatthewP ★ 1.4k
2
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1
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2.3k
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Answer: Answer: how to use nohup with parallel
2.1 years ago by MatthewP ★ 1.4k
0
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0
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1.2k
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Answer: Answer: Can we get fastq read id of certain species that kraken assigned?
2.1 years ago by MatthewP ★ 1.4k
0
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0
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1.1k
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Comment: Comment: Comparing variant calls
2.2 years ago by MatthewP ★ 1.4k
0
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1
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4.6k
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Comment: Comment: gseKEGG - no gene can be mapped (RNAseq analysis)
2.3 years ago by MatthewP ★ 1.4k
0
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1
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2.3k
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Comment: Comment: R:scheduled cores 1, 5 did not deliver results
2.3 years ago by MatthewP ★ 1.4k
1
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1
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970
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Answer: Answer: Multiple sequence alignment of mtDNA HV1-3 in R
2.4 years ago by MatthewP ★ 1.4k
0
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0
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4.0k
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Comment: Comment: MSA visualization python package for sequence analysis
2.6 years ago by MatthewP ★ 1.4k
0
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0
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1.3k
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Comment: Comment: How can Biostrings calculate consensus sequence without counting gaps?
2.7 years ago by MatthewP ★ 1.4k
0
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2
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1.3k
views
How can Biostrings calculate consensus sequence without counting gaps?
Biostrings alignment
2.7 years ago by MatthewP ★ 1.4k
2
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1
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1.3k
views
Comment: Comment: HISAT2 running issue (output getting slower)
2.7 years ago by MatthewP ★ 1.4k
4
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0
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1.7k
views
Answer: Answer: Loading reference genome from BSgenome
2.8 years ago by MatthewP ★ 1.4k
2
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3
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3.4k
views
How to keep sample name while using samtools mpileup + varscan to do variant call?
samtools mpileup varscan
updated 2.9 years ago by 152k • written 7.0 years ago by ★ 1.4k
0
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1
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2.3k
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Comment: Comment: Set up conda rna seq analysis
2.9 years ago by MatthewP ★ 1.4k
0
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1
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2.3k
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Comment: Comment: Set up conda rna seq analysis
2.9 years ago by MatthewP ★ 1.4k
1
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1
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2.3k
views
Comment: Comment: bowtie2 error "Unable to read file magic number"
3.0 years ago by MatthewP ★ 1.4k
0
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0
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2.0k
views
Comment: Comment: How to handle 2 peaks in fastQC GC plot...
3.1 years ago by MatthewP ★ 1.4k
2
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5
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3.4k
views
Some questions about call variants for mtDNA using GATK HaplotypeCaller
GATK HaplotypeCaller mtDNA
updated 3.1 years ago by ▴ 160 • written 6.8 years ago by ★ 1.4k
0
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0
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1.3k
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Comment: Comment: featureCounts stuck
3.3 years ago by MatthewP ★ 1.4k
0
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1
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2.8k
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Comment: Comment: How to do pathway enrichment analysis with genomic ranges data (ATAC-Seq peaks)?
3.3 years ago by MatthewP ★ 1.4k
4
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5
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2.8k
views
How to do pathway enrichment analysis with genomic ranges data (ATAC-Seq peaks)?
ATAC-Seq pathway annotation
updated 3.3 years ago by 4.7k • written 3.3 years ago by ★ 1.4k
1
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0
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4.1k
views
Comment: Comment: DiffBind missing peaks and FRiP
3.3 years ago by MatthewP ★ 1.4k
0
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0
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479
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Do I need to remove ATAC-Seq large peaks?
ATAC-Seq Genrich
3.4 years ago by MatthewP ★ 1.4k
0
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0
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2.2k
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Comment: Comment: Bedtools genomecov - Bam to bedgraph conversion
3.6 years ago by MatthewP ★ 1.4k
1
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0
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3.8k
views
Answer: Answer: Interpreting GISTIC2 output
3.6 years ago by MatthewP ★ 1.4k
0
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0
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2.2k
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Answer: Answer: GATK Mutect2 errors during basic variant calling
3.6 years ago by MatthewP ★ 1.4k
0
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1
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2.0k
views
Comment: Comment: Best practice for running GATK VQSR on X chromosome
3.6 years ago by MatthewP ★ 1.4k
0
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1
reply
2.6k
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Comment: Comment: featureCounts low annotation rate RNA-seq
3.6 years ago by MatthewP ★ 1.4k
0
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1
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2.6k
views
Comment: Comment: featureCounts low annotation rate RNA-seq
3.6 years ago by MatthewP ★ 1.4k
0
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1
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2.6k
views
Answer: Answer: featureCounts low annotation rate RNA-seq
3.6 years ago by MatthewP ★ 1.4k
0
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0
replies
1.9k
views
Answer: Answer: How maftools oncoplot classifies variant classifications
3.7 years ago by MatthewP ★ 1.4k
274 results • Page 1 of 6
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