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0
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744
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What effects will caused if mark duplicate reads before stringtie counts reads?
RNA-Seq stringtie
4.9 years ago by MatthewP ★ 1.4k
3
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1
reply
32k
views
Answer: A: coxph "an id statement is required for multi-state models" error
4.9 years ago by MatthewP ★ 1.4k
0
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0
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1.4k
views
How to plot CNV frequency for large cohort data after GISTIC2 analysis?
gistic2 cnv plot
4.9 years ago by MatthewP ★ 1.4k
0
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1
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3.7k
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Comment: C: Bulk RNA-Seq pipeline suggestion incorporating UMIs
4.9 years ago by MatthewP ★ 1.4k
3
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9
replies
3.0k
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It's there any GISTIC2.0 like tools?
CNV
4.9 years ago by MatthewP ★ 1.4k
0
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0
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2.7k
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Answer: A: How to annotate probes to a GEO serie matrix?
4.9 years ago by MatthewP ★ 1.4k
1
vote
2
replies
1.7k
views
R package ArrayExpress error
ArrayExpress
updated 4.9 years ago by 88k • written 4.9 years ago by ★ 1.4k
0
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0
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1.7k
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Comment: C: R package ArrayExpress error
4.9 years ago by MatthewP ★ 1.4k
1
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1
reply
2.6k
views
Answer: A: Stringtie output gtf file only contains STRG,no original annotations
5.0 years ago by MatthewP ★ 1.4k
0
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0
replies
1.0k
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Comment: C: ncbi-sra,paired end dataset
5.0 years ago by MatthewP ★ 1.4k
0
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1
reply
3.7k
views
Comment: C: How to adjust p values when doing many/multiple univariate cox proportional haza
5.0 years ago by MatthewP ★ 1.4k
1
vote
3
replies
3.7k
views
How to adjust p values when doing many/multiple univariate cox proportional hazards regression?
cox survival
5.0 years ago by MatthewP ★ 1.4k
3
votes
0
replies
5.9k
views
Answer: A: survival analysis of tcga clinical data
5.0 years ago by MatthewP ★ 1.4k
2
votes
1
reply
15k
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Answer: A: Unable to access jar file in Docker image
5.0 years ago by MatthewP ★ 1.4k
0
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1
reply
1.7k
views
Comment: C: biomart function getbm can not get chromesome location of some genes
5.0 years ago by MatthewP ★ 1.4k
0
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0
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1.6k
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Comment: C: Call fusion genes from WES data
5.0 years ago by MatthewP ★ 1.4k
0
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0
replies
1.6k
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STAR-Fusion empty result
STAR-Fusion WGS
5.0 years ago by MatthewP ★ 1.4k
0
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0
replies
1.8k
views
Comment: C: cv.glmnet() gives very close cvm value
5.1 years ago by MatthewP ★ 1.4k
0
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0
replies
5.8k
views
Answer: A: hg38 premade index for STAR Aligner
5.1 years ago by MatthewP ★ 1.4k
1
vote
3
replies
1.8k
views
cv.glmnet() gives very close cvm value
lasso glmnet survival
updated 5.1 years ago by 20 • written 5.1 years ago by ★ 1.4k
0
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0
replies
1.8k
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Comment: C: cv.glmnet() gives very close cvm value
5.1 years ago by MatthewP ★ 1.4k
3
votes
0
replies
14k
views
Answer: A: Differences Between Reference Human Genome Assemblies From Different Sources
5.1 years ago by MatthewP ★ 1.4k
7
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6
replies
3.4k
views
Cox proportional hazards regression use log2 fpkm
cox fpkm
updated 9 weeks ago by • 0 • written 5.1 years ago by ★ 1.4k
0
votes
0
replies
809
views
java-GSEA rank gene list problem
GSEA
5.1 years ago by MatthewP ★ 1.4k
1
vote
0
replies
1.6k
views
Answer: A: GEOquery with local files
5.1 years ago by MatthewP ★ 1.4k
2
votes
1
reply
4.5k
views
How to show selected node lables only in cytoscape?
cytoscape
updated 5.1 years ago by ▴ 620 • written 5.1 years ago by ★ 1.4k
0
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0
replies
1.0k
views
Comment: C: How to detect survival groups?
5.1 years ago by MatthewP ★ 1.4k
0
votes
3
replies
1.0k
views
How to detect survival groups?
survival TCGA
updated 5.1 years ago by 88k • written 5.1 years ago by ★ 1.4k
0
votes
0
replies
1.0k
views
Comment: C: How to detect survival groups?
5.1 years ago by MatthewP ★ 1.4k
2
votes
6
replies
3.6k
views
How to construct co-expression network with correlation matrix?
RNA-Seq
updated 5.1 years ago by ▴ 530 • written 5.1 years ago by ★ 1.4k
0
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1
reply
3.6k
views
Comment: C: How to construct co-expression network with correlation matrix?
5.1 years ago by MatthewP ★ 1.4k
0
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1
reply
3.6k
views
Comment: C: How to construct co-expression network with correlation matrix?
5.1 years ago by MatthewP ★ 1.4k
0
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0
replies
3.7k
views
Comment: C: Gene expression correlation analysis
5.1 years ago by MatthewP ★ 1.4k
0
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1
reply
3.0k
views
Comment: C: It's there any GISTIC2.0 like tools?
5.1 years ago by MatthewP ★ 1.4k
0
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1
reply
4.6k
views
Answer: A: Transcript vs. Gene TPM counts?
5.1 years ago by MatthewP ★ 1.4k
0
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0
replies
2.4k
views
Comment: C: A question on GetPileupSummaries (GATK)
5.2 years ago by MatthewP ★ 1.4k
1
vote
1
reply
908
views
TCGA dataset has 2 HTSeq readcounts file for same tisssue
TCGA
updated 5.2 years ago by ▴ 20 • written 5.2 years ago by ★ 1.4k
1
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0
replies
2.7k
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Comment: C: Mapping Entrez gene ids to Ensembl ids
5.2 years ago by MatthewP ★ 1.4k
0
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1
reply
1.9k
views
Comment: C: Principal Component Analysis PCA
5.2 years ago by MatthewP ★ 1.4k
1
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1
reply
2.7k
views
Comment: C: Mapping Entrez gene ids to Ensembl ids
5.2 years ago by MatthewP ★ 1.4k
2
votes
0
replies
2.9k
views
Answer: A: Popular CNV detection tools
5.2 years ago by MatthewP ★ 1.4k
2
votes
0
replies
2.1k
views
Answer: C: DESeq2 lfcShrink warning use ashr method.
5.2 years ago by MatthewP ★ 1.4k
4
votes
3
replies
2.1k
views
DESeq2 lfcShrink warning use ashr method.
DESeq2 ashr
5.2 years ago by MatthewP ★ 1.4k
1
vote
1
reply
1.1k
views
Singscore get some NA values result, normal?
singscore
5.2 years ago by MatthewP ★ 1.4k
1
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0
replies
1.1k
views
Answer: A: Singscore get some NA values result, normal?
5.2 years ago by MatthewP ★ 1.4k
11
votes
2
replies
5.4k
views
How to know expression matrix on GEO is normalized or not?
geo limma
updated 5.3 years ago by ★ 18k • written 5.3 years ago by ★ 1.4k
1
vote
0
replies
1.1k
views
Comment: C: Can DESeq2 accept Ion AmpliSeq Transcriptome sequencing read counts matrix on GE
5.3 years ago by MatthewP ★ 1.4k
1
vote
1
reply
1.1k
views
Can DESeq2 accept Ion AmpliSeq Transcriptome sequencing read counts matrix on GEO as input?
RNA-Seq DESeq2 GEO Ion
5.3 years ago by MatthewP ★ 1.4k
1
vote
0
replies
3.2k
views
Comment: C: Confusion with fold change cutoff
5.3 years ago by MatthewP ★ 1.4k
1
vote
0
replies
2.6k
views
Comment: C: Will many zero values of relative frequency cause LEFSe error?
5.3 years ago by MatthewP ★ 1.4k
274 results • Page 4 of 6
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