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2
votes
1
reply
2.6k
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Will many zero values of relative frequency cause LEFSe error?
qiime2 LEFSe
updated 5.3 years ago by 20 • written 5.4 years ago by ★ 1.4k
1
vote
0
replies
2.2k
views
Comment: C: Too many fails converting gene SYMBOL to ENTREZID
5.4 years ago by MatthewP ★ 1.4k
1
vote
2
replies
2.2k
views
Too many fails converting gene SYMBOL to ENTREZID
microarray clusterProfiler GEO
5.4 years ago by MatthewP ★ 1.4k
0
votes
1
reply
1.7k
views
Answer: A: small wheat samples fastq or fatq.gz for testing pipeline
5.4 years ago by MatthewP ★ 1.4k
0
votes
0
replies
10k
views
Comment: C: From StringTie to DESeq2
5.4 years ago by MatthewP ★ 1.4k
0
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0
replies
2.8k
views
Comment: C: snpEFF job stucks without any error
5.4 years ago by MatthewP ★ 1.4k
6
votes
0
replies
5.7k
views
Answer: A: Problem with downloading GSE file by GEOquery
5.4 years ago by MatthewP ★ 1.4k
0
votes
0
replies
2.4k
views
Comment: C: Methylation analysis using TCGAbiolinks package
5.4 years ago by MatthewP ★ 1.4k
2
votes
1
reply
3.4k
views
Comment: C: How to annotate GPL for GEO data byhand?
5.4 years ago by MatthewP ★ 1.4k
7
votes
3
replies
3.4k
views
How to annotate GPL for GEO data byhand?
GEO
updated 3.1 years ago by ▴ 10 • written 5.4 years ago by ★ 1.4k
2
votes
1
reply
1.6k
views
Microarray data gene name annotation and multiple probes mapped one gene.
microarray limma
updated 5.4 years ago by 88k • written 5.4 years ago by ★ 1.4k
20
votes
3
replies
7.7k
views
How to process (seems) Agilent microarrry data?
microarray rna
updated 18 months ago by • 0 • written 5.4 years ago by ★ 1.4k
0
votes
1
reply
1.2k
views
Comment: C: Script: VCF to 3 base mutation pattern
5.5 years ago by MatthewP ★ 1.4k
0
votes
2
replies
3.0k
views
Comment: C: How to use result of CNVkit to estimate purity by PureCN
5.5 years ago by MatthewP ★ 1.4k
1
vote
0
replies
2.0k
views
Comment: C: Usage of Mutect2
5.5 years ago by MatthewP ★ 1.4k
1
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2
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2.0k
views
Answer: A: Usage of Mutect2
5.5 years ago by MatthewP ★ 1.4k
0
votes
1
reply
3.0k
views
Comment: C: How to use result of CNVkit to estimate purity by PureCN
5.5 years ago by MatthewP ★ 1.4k
2
votes
4
replies
1.3k
views
Any database can substitute OMIM?
omim
updated 5.5 years ago by 8.3k • written 5.5 years ago by ★ 1.4k
0
votes
0
replies
1.3k
views
Comment: C: Any database can substitute OMIM?
5.5 years ago by MatthewP ★ 1.4k
2
votes
2
replies
3.1k
views
How to draw heatmap plot use cnv seg data called by gatk?
cnv gatk heatmap
updated 5.5 years ago by 88k • written 5.5 years ago by ★ 1.4k
0
votes
0
replies
1.2k
views
Answer: A: How to get actual location of CNV from CNVKit
5.5 years ago by MatthewP ★ 1.4k
1
vote
0
replies
1.5k
views
Answer: A: How to download the sequences of a gene of all species?
5.5 years ago by MatthewP ★ 1.4k
0
votes
0
replies
1.7k
views
How to construct exome interval file for gatk CNV pipeline?
gatk cnv
5.5 years ago by MatthewP ★ 1.4k
0
votes
1
reply
7.1k
views
Comment: C: GATK genomicsDBimport intervals for WGS
5.5 years ago by MatthewP ★ 1.4k
2
votes
2
replies
1.6k
views
Answer: A: SNPs in Promoter region
5.6 years ago by MatthewP ★ 1.4k
2
votes
1
reply
1.3k
views
Why cnvkit genemetrics command default threshold is 0.2?
cnvkit
updated 5.6 years ago by 85k • written 5.6 years ago by ★ 1.4k
0
votes
0
replies
1.4k
views
Comment: C: Can CVNkit call CNV correctly at HLA genes region?
5.6 years ago by MatthewP ★ 1.4k
0
votes
2
replies
1.4k
views
Can CVNkit call CNV correctly at HLA genes region?
CNVKIT wes HLA
updated 5.6 years ago by ▴ 10 • written 5.6 years ago by ★ 1.4k
0
votes
1
reply
1.0k
views
Answer: A: minimum snp number from set in LD
5.6 years ago by MatthewP ★ 1.4k
0
votes
1
reply
3.2k
views
Comment: C: How to determine gender by homozygosity (rate?) in X chromosome?
5.6 years ago by MatthewP ★ 1.4k
2
votes
1
reply
1.2k
views
Comment: C: HISAT2 index build: what to do for SNPs with >1 alt alleles
5.7 years ago by MatthewP ★ 1.4k
0
votes
1
reply
5.7k
views
Comment: C: VCF tabix query by ID column
5.7 years ago by MatthewP ★ 1.4k
0
votes
0
replies
906
views
How to filter RNA editing data called by RED-ML
RNA-Seq RNA Editing
5.8 years ago by MatthewP ★ 1.4k
1
vote
1
reply
2.1k
views
Comment: C: snpEff for bacteria
5.8 years ago by MatthewP ★ 1.4k
3
votes
0
replies
4.5k
views
Answer: A: web efetch Json out put which is not a real json
5.8 years ago by MatthewP ★ 1.4k
0
votes
0
replies
1.0k
views
Comment: C: Why rs193922900 and rs59736472 seem to be special for RNAEditor?
5.8 years ago by MatthewP ★ 1.4k
3
votes
3
replies
22k
views
Answer: A: VCF To FASTA
5.8 years ago by MatthewP ★ 1.4k
0
votes
2
replies
1.0k
views
Why rs193922900 and rs59736472 seem to be special for RNAEditor?
RNA-Seq RNAEditor SNP
5.8 years ago by MatthewP ★ 1.4k
0
votes
0
replies
16k
views
Comment: C: Tools To Do the Alternative Splicing Analysis
5.8 years ago by MatthewP ★ 1.4k
1
vote
0
replies
2.3k
views
Answer: A: How to convert data from NCBI E-utilities.efetch to python data object?
5.8 years ago by MatthewP ★ 1.4k
3
votes
3
replies
2.3k
views
How to convert data from NCBI E-utilities.efetch to python data object?
NCBI Python
5.8 years ago by MatthewP ★ 1.4k
2
votes
1
reply
1.3k
views
What is the best way to get all human genes(name/UID) ?
gene NCBI
5.9 years ago by MatthewP ★ 1.4k
0
votes
0
replies
3.2k
views
Comment: C: How to do a phylogenetic tree?
5.9 years ago by MatthewP ★ 1.4k
0
votes
1
reply
2.4k
views
Comment: C: Bootstrap function biopython
5.9 years ago by MatthewP ★ 1.4k
0
votes
1
reply
2.7k
views
Comment: C: Can gffread extract specific region sequences from vcf or fasta file?
5.9 years ago by MatthewP ★ 1.4k
0
votes
1
reply
2.7k
views
Comment: C: Can gffread extract specific region sequences from vcf or fasta file?
5.9 years ago by MatthewP ★ 1.4k
3
votes
6
replies
2.7k
views
Can gffread extract specific region sequences from vcf or fasta file?
gffread vcf gff3
updated 5.9 years ago by ▴ 140 • written 5.9 years ago by ★ 1.4k
0
votes
0
replies
4.5k
views
Comment: C: How to use snpSift annotate -info option to annotate specific fields of INFO
6.0 years ago by MatthewP ★ 1.4k
3
votes
4
replies
4.5k
views
How to use snpSift annotate -info option to annotate specific fields of INFO
snpSift annotation
updated 6.0 years ago by 16k • written 6.0 years ago by ★ 1.4k
0
votes
1
reply
4.4k
views
Comment: C: Downstream analysis of VCF files obtained from VarScan2
6.0 years ago by MatthewP ★ 1.4k
274 results • Page 5 of 6
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