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Comment: Comment: How to download FASTQ files from the European Nucleotide Archive (ENA) to use th
1 day ago by psm ▴ 130
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1
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1.2k
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Comment: Comment: Pre-processing for single cell RNAseq: Hard thresholds, data (cluster)-driven or
8 months ago by psm ▴ 130
0
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1
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1.2k
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Comment: Comment: Pre-processing for single cell RNAseq: Hard thresholds, data (cluster)-driven or
8 months ago by psm ▴ 130
4
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6
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1.2k
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Pre-processing for single cell RNAseq: Hard thresholds, data (cluster)-driven or both?
scRNA-seq
updated 7 months ago by ▴ 120 • written 8 months ago by ▴ 130
2
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2
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1.1k
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Seurat: Log fold change and p value when control expression is 0
RNA-seq DGE
updated 11 months ago by 4.2k • written 11 months ago by ▴ 130
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0
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961
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Comment: Comment: Choice for statistical test (and R package)
11 months ago by psm ▴ 130
0
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1
reply
961
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Comment: Comment: Choice for statistical test (and R package)
11 months ago by psm ▴ 130
4
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4
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961
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Choice for statistical test (and R package)
RNA-seq DGE
11 months ago by psm ▴ 130
0
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1
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2.0k
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Comment: Comment: How much RAM for scRNAseq 200K cells?
19 months ago by psm ▴ 130
3
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4
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2.0k
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How much RAM for scRNAseq 200K cells?
cells Single RNA-seq cell
updated 19 months ago by 4.0k • written 19 months ago by ▴ 130
0
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1
reply
521
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Close correlation between differentially-expressed genes
rna-seq
updated 19 months ago by ▴ 150 • written 19 months ago by ▴ 130
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0
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2.7k
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Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
2.3 years ago by psm ▴ 130
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0
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2.7k
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Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
2.3 years ago by psm ▴ 130
0
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0
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2.7k
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Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
2.3 years ago by psm ▴ 130
0
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2
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2.7k
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Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
2.3 years ago by psm ▴ 130
0
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1
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2.7k
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Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
2.3 years ago by psm ▴ 130
0
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2
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2.7k
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Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
2.3 years ago by psm ▴ 130
0
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0
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6.5k
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Comment: Comment: Enrichment score of ssGSEA
2.3 years ago by psm ▴ 130
0
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1
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2.7k
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Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
2.3 years ago by psm ▴ 130
8
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19
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2.7k
views
Multiple correlations RNAseq data - correction for multiple testing?
statistics rnaseq correlation
2.3 years ago by psm ▴ 130
0
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1
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2.7k
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Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
2.3 years ago by psm ▴ 130
1
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0
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533
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Differential gene expression analysis on microarray dataset with files from two chips
differential expression microarray
2.5 years ago by psm ▴ 130
0
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0
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2.4k
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Comment: C: Pre-processing RNAseq data before PCA or tSNE: Log-transform data?
3.3 years ago by psm ▴ 130
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0
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2.4k
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Comment: C: Pre-processing RNAseq data before PCA or tSNE: Log-transform data?
3.3 years ago by psm ▴ 130
3
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4
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2.4k
views
Pre-processing RNAseq data before PCA or tSNE: Log-transform data?
RNA-Seq
updated 3.3 years ago by 83k • written 3.3 years ago by ▴ 130
5
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2
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3.2k
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DGE analysis with more than 2+ groups: Compare to reference or compare to all other groups?
RNA-Seq
updated 3.3 years ago by 83k • written 3.3 years ago by ▴ 130
0
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0
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473
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Comment: C: Software/Package to automatically annotate genes? Do any exist?
3.4 years ago by psm ▴ 130
0
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2
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473
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Software/Package to automatically annotate genes? Do any exist?
RNA-Seq
3.4 years ago by psm ▴ 130
1
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0
replies
2.4k
views
Comment: C: ChipQC doesn't run
3.7 years ago by psm ▴ 130
0
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0
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3.7k
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Comment: C: Seurat Violin Plot shows counts LESS than 0?
3.8 years ago by psm ▴ 130
1
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2
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3.7k
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Seurat Violin Plot shows counts LESS than 0?
RNA-Seq
updated 3.8 years ago by 5.4k • written 3.8 years ago by ▴ 130
0
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0
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2.4k
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Comment: C: Importing zUMI output of single nuclear RNA-seq data to Seurat: Introns, exons,
3.9 years ago by psm ▴ 130
0
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1
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2.4k
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Comment: C: Importing zUMI output of single nuclear RNA-seq data to Seurat: Introns, exons,
3.9 years ago by psm ▴ 130
2
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6
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2.4k
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Importing zUMI output of single nuclear RNA-seq data to Seurat: Introns, exons, or both?
RNA-Seq
updated 2.9 years ago by • 0 • written 3.9 years ago by ▴ 130
0
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2
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2.7k
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Comment: C: Is the ssGSEA enrichment score affected by other samples in the analysis group?
3.9 years ago by psm ▴ 130
1
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0
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2.3k
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Comment: C: GSVA kernels: Gaussian or Poisson?
3.9 years ago by psm ▴ 130
4
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2
replies
2.3k
views
GSVA kernels: Gaussian or Poisson?
RNA-Seq
updated 3.9 years ago by 88k • written 3.9 years ago by ▴ 130
1
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5
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2.7k
views
Is the ssGSEA enrichment score affected by other samples in the analysis group?
ssGSEA R RNA-Seq
updated 3.0 years ago by 13k • written 3.9 years ago by ▴ 130
0
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1
reply
6.5k
views
Answer: A: Enrichment score of ssGSEA
3.9 years ago by psm ▴ 130
0
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0
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2.1k
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Comment: A: single cell sequencing data doublets removal tools selection
4.0 years ago by psm ▴ 130
0
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1
reply
6.3k
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Comment: C: hisat2-build indexing produces more than 8 output files
5.7 years ago by psm ▴ 130
0
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0
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4.9k
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Comment: C: ENSEMBL annotation file for quantification: which file to use?
5.7 years ago by psm ▴ 130
0
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0
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4.9k
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Comment: C: ENSEMBL annotation file for quantification: which file to use?
5.7 years ago by psm ▴ 130
0
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0
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4.9k
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Comment: C: ENSEMBL annotation file for quantification: which file to use?
5.7 years ago by psm ▴ 130
13
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8
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4.9k
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ENSEMBL annotation file for quantification: which file to use?
RNA-Seq ensembl annotation
updated 5.7 years ago by ★ 2.4k • written 5.7 years ago by ▴ 130
0
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1
reply
6.3k
views
Comment: C: hisat2-build indexing produces more than 8 output files
5.7 years ago by psm ▴ 130
3
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0
replies
2.6k
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HISAT2: Extracting splice sites and exons for index
RNA-Seq alignment
5.7 years ago by psm ▴ 130
0
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0
replies
5.9k
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Comment: C: RNA-seq: How to know which paired reads come from the same original fragment?
5.7 years ago by psm ▴ 130
0
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1
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5.9k
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Comment: C: RNA-seq: How to know which paired reads come from the same original fragment?
5.7 years ago by psm ▴ 130
7
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9
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5.9k
views
RNA-seq: How to know which paired reads come from the same original fragment?
RNA-Seq Assembly
updated 2.9 years ago by • 0 • written 6.0 years ago by ▴ 130
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