Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
2
replies
830
views
Can ETE3 list all bacterial species present in NCBI Taxonomy?
NCBI ETE3 taxonomy
2.8 years ago by Andrzej Zielezinski 11k
0
votes
0
replies
1.6k
views
Comment: Comment: proteins global alignment using BLOSUM80
2.9 years ago by Andrzej Zielezinski 11k
2
votes
1
reply
1.6k
views
Answer: Answer: proteins global alignment using BLOSUM80
2.9 years ago by Andrzej Zielezinski 11k
3
votes
1
reply
929
views
Any tool to identify HGT events based on gene and species trees?
hgt phylogeny tree
updated 3.2 years ago by 3.8k • written 3.2 years ago by 11k
1
vote
1
reply
5.2k
views
Comment: Comment: Use BLAST Command Line Applications to run a folder of many sequences against a
3.2 years ago by Andrzej Zielezinski 11k
1
vote
1
reply
5.2k
views
Comment: Comment: Use BLAST Command Line Applications to run a folder of many sequences against a
3.2 years ago by Andrzej Zielezinski 11k
0
votes
0
replies
995
views
Comment: Comment: How to download all the genome fasta file for plants?
3.2 years ago by Andrzej Zielezinski 11k
0
votes
1
reply
5.2k
views
Comment: Comment: Use BLAST Command Line Applications to run a folder of many sequences against a
3.2 years ago by Andrzej Zielezinski 11k
0
votes
0
replies
1.4k
views
Comment: Comment: create protein database for local Blast
3.2 years ago by Andrzej Zielezinski 11k
0
votes
1
reply
3.7k
views
Comment: Comment: Sorting and writing multifasta entries to new fasta files
3.2 years ago by Andrzej Zielezinski 11k
4
votes
1
reply
3.7k
views
Answer: Answer: Sorting and writing multifasta entries to new fasta files
3.2 years ago by Andrzej Zielezinski 11k
0
votes
0
replies
3.7k
views
Comment: Comment: Sorting and writing multifasta entries to new fasta files
3.2 years ago by Andrzej Zielezinski 11k
2
votes
0
replies
1.7k
views
Comment: Comment: Flipping a DNA sequence (not reverse complementing) using command line/samtools?
3.3 years ago by Andrzej Zielezinski 11k
4
votes
1
reply
1.7k
views
Answer: Answer: Flipping a DNA sequence (not reverse complementing) using command line/samtools?
3.3 years ago by Andrzej Zielezinski 11k
1
vote
1
reply
5.2k
views
Comment: Comment: Use BLAST Command Line Applications to run a folder of many sequences against a
3.3 years ago by Andrzej Zielezinski 11k
1
vote
1
reply
5.2k
views
Comment: Comment: Use BLAST Command Line Applications to run a folder of many sequences against a
3.3 years ago by Andrzej Zielezinski 11k
1
vote
1
reply
5.2k
views
Comment: Comment: Use BLAST Command Line Applications to run a folder of many sequences against a
3.3 years ago by Andrzej Zielezinski 11k
0
votes
0
replies
2.1k
views
Comment: Comment: How to collapse leaves with the same name in ETE3 tree?
3.4 years ago by Andrzej Zielezinski 11k
0
votes
0
replies
2.4k
views
Comment: Comment: How to find the fasta file with maxium number of amino acids?
3.4 years ago by Andrzej Zielezinski 11k
1
vote
1
reply
2.4k
views
Answer: Answer: How to find the fasta file with maxium number of amino acids?
3.4 years ago by Andrzej Zielezinski 11k
0
votes
0
replies
21k
views
Comment: Comment: BLOSUM62 in Python
3.5 years ago by Andrzej Zielezinski 11k
2
votes
0
replies
704
views
Answer: A: How do I make my code go through all through my list in my file.
3.7 years ago by Andrzej Zielezinski 11k
5
votes
1
reply
995
views
Answer: C: blastn with short sequences gives no results in the corresponding genome
3.8 years ago by Andrzej Zielezinski 11k
1
vote
1
reply
871
views
Comment: C: Problem with Bio.SeqIO
3.9 years ago by Andrzej Zielezinski 11k
1
vote
1
reply
1.4k
views
Comment: C: Get closest taxa of a target species in a phylogeny
4.0 years ago by Andrzej Zielezinski 11k
4
votes
1
reply
1.4k
views
Answer: A: Get closest taxa of a target species in a phylogeny
4.0 years ago by Andrzej Zielezinski 11k
21
votes
0
replies
30k
views
Answer: A: Difference between NCBI non-redundant and refseq database
4.0 years ago by Andrzej Zielezinski 11k
3
votes
0
replies
1.2k
views
Answer: A: Need help with Pairwise Alignment module in iterating over the alignment
4.1 years ago by Andrzej Zielezinski 11k
0
votes
1
reply
1.2k
views
Comment: C: Need help with Pairwise Alignment module in iterating over the alignment
4.1 years ago by Andrzej Zielezinski 11k
0
votes
0
replies
1.4k
views
Comment: C: Printing for each specific sequence and its residue in msa , every msa position
4.1 years ago by Andrzej Zielezinski 11k
1
vote
1
reply
1.4k
views
Answer: A: Printing for each specific sequence and its residue in msa , every msa position
4.1 years ago by Andrzej Zielezinski 11k
0
votes
1
reply
1.7k
views
Comment: C: How to combine p-values of differentially expressed genes from different timepoi
4.2 years ago by Andrzej Zielezinski 11k
0
votes
0
replies
1.0k
views
Comment: C: Calculate Ka/Ks using examples of two sequences.
4.2 years ago by Andrzej Zielezinski 11k
2
votes
1
reply
43k
views
Answer: A: python 3.8 'No module named pip'
4.4 years ago by Andrzej Zielezinski 11k
0
votes
0
replies
3.0k
views
Comment: C: Comparing multiple columns from 2 files using awk, perl or python
4.5 years ago by Andrzej Zielezinski 11k
0
votes
0
replies
3.0k
views
Comment: C: Comparing multiple columns from 2 files using awk, perl or python
4.5 years ago by Andrzej Zielezinski 11k
2
votes
0
replies
3.0k
views
Answer: A: Comparing multiple columns from 2 files using awk, perl or python
4.5 years ago by Andrzej Zielezinski 11k
0
votes
0
replies
2.3k
views
Comment: C: ID query with entrez -- invalid ID - rllib.error.HTTPError: HTTP Error 400: Bad
4.5 years ago by Andrzej Zielezinski 11k
6
votes
2
replies
2.3k
views
Answer: A: ID query with entrez -- invalid ID - rllib.error.HTTPError: HTTP Error 400: Bad
4.5 years ago by Andrzej Zielezinski 11k
3
votes
0
replies
2.2k
views
Answer: A: Script to obtain human protein sequences by the gene symbols
4.5 years ago by Andrzej Zielezinski 11k
1
vote
0
replies
1.6k
views
Answer: C: Makeblastdb refseq viral protein sequence (Blast db v5)
4.5 years ago by Andrzej Zielezinski 11k
1
vote
0
replies
2.1k
views
Answer: A: Online pipeline for MSA and NJ tree generation bootstrap supported
4.6 years ago by Andrzej Zielezinski 11k
5
votes
0
replies
4.0k
views
Answer: A: Reverse translate to all possible codons
4.6 years ago by Andrzej Zielezinski 11k
0
votes
0
replies
1.0k
views
Comment: C: leafs in the MESH tree
4.7 years ago by Andrzej Zielezinski 11k
3
votes
1
reply
1.0k
views
Answer: A: leafs in the MESH tree
4.7 years ago by Andrzej Zielezinski 11k
4
votes
0
replies
2.9k
views
Answer: A: Biopython gives ValueError: Sequences must all be the same length even though se
4.8 years ago by Andrzej Zielezinski 11k
2
votes
1
reply
4.8k
views
Comment: C: kraken and kraken2: Downloading taxonomy tree data...rsync: error while loading
4.8 years ago by Andrzej Zielezinski 11k
4
votes
1
reply
2.3k
views
Answer: A: Download all bacterial proteins from the same family
updated 4.9 years ago by 44k • written 8.8 years ago by 11k
3
votes
0
replies
3.2k
views
Answer: A: Using io.StringIO() with biopython Phylo parse
updated 4.9 years ago by 44k • written 8.8 years ago by 11k
4
votes
1
reply
1.7k
views
Answer: A: Divergence time of all species compared to human
updated 4.9 years ago by 44k • written 8.8 years ago by 11k
448 results • Page 2 of 9
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6