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Ethnicity information in GTEx dataset
metadata gtex
updated 9 months ago by 152k • written 9 months ago by ▴ 410
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828
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Comment: Comment: Pandas Data Frame
2.7 years ago by husensofteng ▴ 410
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739
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Comment: Comment: identification of overlapped, proximal and distal gene for peak regions
2.7 years ago by husensofteng ▴ 410
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2.6k
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Comment: Comment: Getting VCF file for the 1000 genome project with rsid
3.4 years ago by husensofteng ▴ 410
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1.9k
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Answer: Answer: I'm not sure my Bulk RNAseq read counts extracted from fastq file are correct
3.7 years ago by husensofteng ▴ 410
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1.5k
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Answer: Answer: Naïve question about LC-MS/MS proteomic datasets : looking for ressources, studi
3.7 years ago by husensofteng ▴ 410
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1.5k
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Answer: Answer: how to merge two files in two columns using bash command lines
4.0 years ago by husensofteng ▴ 410
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3.2k
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Comment: Comment: How to find overlapping coordinates of a gtf file
4.0 years ago by husensofteng ▴ 410
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2.5k
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Comment: C: bedtools multiple BAM files
4.6 years ago by husensofteng ▴ 410
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1.7k
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Comment: C: Sequence Retrieval of SARS-CoV Complete Genomes
4.6 years ago by husensofteng ▴ 410
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1.5k
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Comment: C: Visualizing alternative splicing events
4.6 years ago by husensofteng ▴ 410
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1.5k
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Comment: C: Visualizing alternative splicing events
4.6 years ago by husensofteng ▴ 410
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1.4k
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Comment: C: Strandness of ENCODE RNA-seq data
4.6 years ago by husensofteng ▴ 410
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1.4k
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Comment: C: Strandness of ENCODE RNA-seq data
4.6 years ago by husensofteng ▴ 410
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4
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1.4k
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Strandness of ENCODE RNA-seq data
RNA-Seq ENCODE Assembly
4.6 years ago by husensofteng ▴ 410
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1.6k
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Comment: C: Multi-records genbank to CDS
4.8 years ago by husensofteng ▴ 410
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1.6k
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Comment: C: analyse bam file
4.8 years ago by husensofteng ▴ 410
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1.5k
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Answer: A: Create a database of RefSeq genes
4.9 years ago by husensofteng ▴ 410
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838
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Comment: C: protein database and ensembl
4.9 years ago by husensofteng ▴ 410
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838
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Comment: C: protein database and ensembl
4.9 years ago by husensofteng ▴ 410
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1.7k
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Comment: C: To remove variants that encode for PE-PPE proteins from .vcf file
4.9 years ago by husensofteng ▴ 410
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941
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Comment: C: Intron retension calculation (non-model organism)?
4.9 years ago by husensofteng ▴ 410
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1.8k
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Comment: C: Whole Genome Sequencing Data Annotation
4.9 years ago by husensofteng ▴ 410
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5.7k
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Comment: C: I get this error while creating database on BLAST: BLAST Database creation error
4.9 years ago by husensofteng ▴ 410
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4.9k
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Comment: C: Getting coding sequence length
4.9 years ago by husensofteng ▴ 410
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934
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Comment: C: Searching for introns within 5'UTRs
4.9 years ago by husensofteng ▴ 410
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1.8k
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Comment: C: Biopython SeqIO.parse not functioning for all entries in a seq
5.0 years ago by husensofteng ▴ 410
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0
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954
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Comment: C: Searching for genomic coordinates of histone/chromatin states in Roadmap epigeno
5.0 years ago by husensofteng ▴ 410
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1
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1.8k
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Answer: C: genomic features 3'utr and 5'utr
5.0 years ago by husensofteng ▴ 410
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1
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1.1k
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Comment: C: How to get the best overlap
5.1 years ago by husensofteng ▴ 410
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1
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1.4k
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Answer: C: Detecting potentially unannotated genes from RNA-seq alignments?
5.1 years ago by husensofteng ▴ 410
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1.8k
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Answer: A: per sample mean coverage and standard deviation
5.1 years ago by husensofteng ▴ 410
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5.8k
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Comment: C: Clarification of good pipeline for transcriptome assembly of RNA-seq data
5.1 years ago by husensofteng ▴ 410
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4
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3.6k
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GATK Interval list for processing mouse genome WGS
GATK WGS GRCm38 genome
updated 5.6 years ago by 13k • written 6.9 years ago by ▴ 410
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2.7k
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Comment: C: Genomic coordinates from GENCODE annotation file
5.9 years ago by husensofteng ▴ 410
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7.8k
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Comment: C: convert genome file to transcriptome file
6.0 years ago by husensofteng ▴ 410
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1
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7.8k
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Answer: A: convert genome file to transcriptome file
6.0 years ago by husensofteng ▴ 410
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3.1k
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Answer: A: Keeping only common variants in the merged VCF file
6.1 years ago by husensofteng ▴ 410
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1
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4.0k
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Answer: A: get GTEx mean expression by tissue
6.1 years ago by husensofteng ▴ 410
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1.4k
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Comment: C: Checking regions with high density of SNPs
6.1 years ago by husensofteng ▴ 410
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2.9k
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Comment: C: Stringtie merge assembly with extra transcripts
6.1 years ago by husensofteng ▴ 410
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1
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4.4k
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Answer: A: Mapping SNP position to gff file
updated 6.1 years ago by 88k • written 6.1 years ago by ▴ 410
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1
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2.9k
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Answer: A: Stringtie merge assembly with extra transcripts
6.1 years ago by husensofteng ▴ 410
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1.1k
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Job: Front-end developer for research and cancer personalized medicine platforms
web-portal front-end javascript HTML
updated 2.1 years ago by 45k • written 6.2 years ago by ▴ 410
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2.0k
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Comment: C: compare two columns of two files
6.2 years ago by husensofteng ▴ 410
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1.6k
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Comment: C: Annotation of noncoding variants and transcription factor motifs
6.3 years ago by husensofteng ▴ 410
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7.6k
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Answer: A: How to access specifically 30x NA12878 sequencing runs
6.3 years ago by husensofteng ▴ 410
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10k
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Answer: A: Example datasets for RNA-Seq Differential Expression Analysis
6.3 years ago by husensofteng ▴ 410
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1.4k
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Answer: A: Trascription factor binding site prediction
6.3 years ago by husensofteng ▴ 410
3
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2
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1.6k
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Tool: Annotation of noncoding variants and transcription factor motifs
TF-Motifs regulatory noncoding-variants
updated 24 months ago by 45k • written 6.5 years ago by ▴ 410
51 results • Page 1 of 2
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