Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
1.1k
views
Answer: Answer: Using TCGABioLinks to query multiple cancer studies
updated 5 months ago by 150k • written 5 months ago by 12k
4
votes
1
reply
12k
views
Answer: Answer: How To Extract Spliced Rnaseq Reads
updated 2.3 years ago by 45k • written 11.3 years ago by 12k
0
votes
1
reply
2.6k
views
Comment: C: [Samtools] How many hours does it take to call SNPs and indels?
updated 5.2 years ago by 45k • written 10.8 years ago by 12k
4
votes
0
replies
9.2k
views
Answer: A: Difference between RNA-sq and Transcriptome
updated 5.2 years ago by 45k • written 10.8 years ago by 12k
1
vote
1
reply
6.0k
views
Answer: A: bowtie1 -m --best --strata options
updated 5.2 years ago by 45k • written 10.8 years ago by 12k
3
votes
0
replies
8.2k
views
Answer: A: Why is DNA split into many fragments before being sequenced by an Illumina seque
updated 5.2 years ago by 45k • written 10.8 years ago by 12k
2
votes
0
replies
14k
views
Answer: A: finding mutations in RNA-Seq data
updated 5.2 years ago by 45k • written 10.8 years ago by 12k
0
votes
1
reply
3.1k
views
Comment: C: csfasta malformed qualities
updated 5.2 years ago by 45k • written 10.8 years ago by 12k
1
vote
1
reply
2.8k
views
Comment: C: Increase percentage of reads needed to call a SNP in Unified Genotyper
updated 5.2 years ago by 45k • written 10.8 years ago by 12k
1
vote
1
reply
13k
views
Comment: C: samtools idxstats on indexed BAM failed
updated 5.2 years ago by 45k • written 10.8 years ago by 12k
10
votes
2
replies
37k
views
Answer: A: Estimating Insert Size From Paired End Data.
updated 5.2 years ago by 45k • written 11.1 years ago by 12k
2
votes
0
replies
2.3k
views
Answer: A: Are variable lengths are a problem for tophat2?
updated 5.2 years ago by 45k • written 10.8 years ago by 12k
7
votes
0
replies
11k
views
Answer: A: How Coverage percentage is calculated in NGS data
updated 5.2 years ago by 45k • written 10.8 years ago by 12k
0
votes
0
replies
4.0k
views
Comment: C: How to compute average depth of coverage for expression matrix
updated 5.2 years ago by 45k • written 10.9 years ago by 12k
0
votes
1
reply
4.8k
views
Answer: A: how transfer a vcf-file to fasta-format
updated 5.2 years ago by 45k • written 10.9 years ago by 12k
0
votes
0
replies
7.3k
views
Comment: C: What is ref sequence name in BAM file header ?
updated 5.2 years ago by 45k • written 10.9 years ago by 12k
2
votes
1
reply
3.9k
views
Answer: A: Detecting Variants near repeats
updated 5.2 years ago by 45k • written 10.9 years ago by 12k
1
vote
0
replies
5.8k
views
Answer: A: How to find out codon changes in non-synonymous and synonymous SNPs
updated 5.2 years ago by 45k • written 10.9 years ago by 12k
0
votes
0
replies
6.9k
views
Comment: C: How To Query The Human Chipseq Data (Encode) For A Transcription Factor Binding
updated 5.2 years ago by 45k • written 10.9 years ago by 12k
0
votes
0
replies
38k
views
Comment: C: Compare 2 VCF files
updated 5.2 years ago by 45k • written 10.9 years ago by 12k
1
vote
1
reply
5.2k
views
Comment: C: sed newbie question: removing a specific letter in a word from fasta heading usi
updated 5.2 years ago by 45k • written 10.9 years ago by 12k
1
vote
1
reply
5.2k
views
Comment: C: sed newbie question: removing a specific letter in a word from fasta heading usi
updated 5.2 years ago by 45k • written 10.9 years ago by 12k
0
votes
1
reply
6.7k
views
Comment: C: Is the source code for the NCBI-BLAST service available anywhere?
updated 5.2 years ago by 45k • written 10.9 years ago by 12k
0
votes
0
replies
6.3k
views
Comment: C: EMBOSS Needle: Read sequences from stdin
updated 5.2 years ago by 45k • written 10.9 years ago by 12k
2
votes
1
reply
6.3k
views
Answer: A: EMBOSS Needle: Read sequences from stdin
updated 5.2 years ago by 45k • written 10.9 years ago by 12k
1
vote
0
replies
5.3k
views
Comment: C: NGS pipeline analyses
updated 5.2 years ago by 45k • written 10.9 years ago by 12k
4
votes
0
replies
4.8k
views
Answer: A: what is the properties of filtering the vcf files
updated 5.2 years ago by 45k • written 10.9 years ago by 12k
5
votes
0
replies
5.3k
views
Answer: A: NGS pipeline analyses
updated 5.2 years ago by 45k • written 10.9 years ago by 12k
0
votes
0
replies
10k
views
Comment: C: TopHat paramertes " -G/--GTF <GTF/GFF3 file>
updated 5.2 years ago by 45k • written 10.9 years ago by 12k
1
vote
1
reply
10k
views
Answer: A: TopHat paramertes " -G/--GTF <GTF/GFF3 file>
updated 5.2 years ago by 45k • written 10.9 years ago by 12k
0
votes
0
replies
39k
views
Comment: C: GTF annotation file for Human
updated 5.3 years ago by 45k • written 10.9 years ago by 12k
10
votes
2
replies
39k
views
Answer: A: GTF annotation file for Human
updated 5.3 years ago by 45k • written 10.9 years ago by 12k
2
votes
0
replies
2.1k
views
Answer: A: Cuffldiff is almost done, but it seems to be hanging at "99% complete"
updated 5.3 years ago by 45k • written 10.9 years ago by 12k
0
votes
0
replies
2.9k
views
Comment: C: samtools + map
updated 5.3 years ago by 45k • written 10.9 years ago by 12k
0
votes
0
replies
11k
views
Comment: C: Paired-End Reads Alignment For Variant Calling ?
updated 5.3 years ago by 45k • written 10.9 years ago by 12k
0
votes
0
replies
3.3k
views
Answer: A: functional analysis of intronic and neargene SNPs
updated 5.3 years ago by 45k • written 10.9 years ago by 12k
4
votes
1
reply
9.2k
views
Comment: C: How to start Bioinformatics ?
updated 5.3 years ago by 45k • written 10.9 years ago by 12k
1
vote
0
replies
15k
views
Answer: A: What is GFF3 and how to extract genomic sequences from it?
updated 5.3 years ago by 45k • written 10.9 years ago by 12k
4
votes
1
reply
7.7k
views
Answer: A: miRNA alignment to the genome
updated 5.3 years ago by 45k • written 10.9 years ago by 12k
5
votes
0
replies
5.0k
views
Answer: A: How to find the differences between filtered and unfiltered VCF files
updated 5.3 years ago by 45k • written 11.0 years ago by 12k
1
vote
0
replies
4.4k
views
Comment: C: Reads mapped to another chromosome in paired-end data of RNA-seq
updated 5.3 years ago by 45k • written 10.8 years ago by 12k
4
votes
0
replies
6.9k
views
Answer: A: In Rna-Seq Data, How To Separate Intronic, Exonic, Non-Coding, Snornas ?
updated 5.3 years ago by 45k • written 11.0 years ago by 12k
12
votes
2
replies
23k
views
Answer: A: Filtration Of Reads With Length Lower Than 30 From Bam
updated 5.3 years ago by 45k • written 11.1 years ago by 12k
2
votes
0
replies
9.2k
views
Comment: C: How To Write A Perl Script To Parse Fastq Files
updated 5.3 years ago by 45k • written 11.5 years ago by 12k
0
votes
1
reply
4.0k
views
Comment: C: Exome Sequencing Alignment Question
updated 5.3 years ago by 45k • written 11.5 years ago by 12k
4
votes
2
replies
9.8k
views
Answer: A: Substituting Snps On Reference Genome Assemblies
updated 5.3 years ago by 45k • written 11.9 years ago by 12k
0
votes
1
reply
4.0k
views
Comment: C: A Question About Samtools And Calculating Depth
updated 5.3 years ago by 45k • written 12.0 years ago by 12k
3
votes
0
replies
6.5k
views
Answer: A: Compare Vcf Files
updated 5.3 years ago by 45k • written 12.2 years ago by 12k
2
votes
0
replies
5.4k
views
Answer: C: Replace vcf in-house variant IDs with dnSNP variant IDs
updated 5.3 years ago by 45k • written 9.5 years ago by 12k
4
votes
1
reply
5.9k
views
Comment: C: Log transformation of RPKM data for PCA analysis
updated 5.4 years ago by 45k • written 9.4 years ago by 12k
1,162 results • Page 1 of 24
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6