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0
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2
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903
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weird python error
python OSError
updated 4.1 years ago by 20 • written 5.0 years ago by ▴ 150
1
vote
3
replies
2.1k
views
How to overcome R memory error
RNA-Seq FASTA R
4.4 years ago by 2405592M ▴ 150
0
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1
reply
2.1k
views
Comment: C: How to overcome R memory error
4.4 years ago by 2405592M ▴ 150
2
votes
0
replies
1.8k
views
Comment: C: Tximport Error ... unable to match up my quant.sf and tx2gene columns
4.5 years ago by 2405592M ▴ 150
0
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0
replies
1.8k
views
Comment: C: Tximport Error ... unable to match up my quant.sf and tx2gene columns
4.5 years ago by 2405592M ▴ 150
3
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4
replies
1.8k
views
Tximport Error ... unable to match up my quant.sf and tx2gene columns
RNA-Seq Tximport salmon
4.5 years ago by 2405592M ▴ 150
0
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0
replies
7.3k
views
Comment: C: error when run tximport for salmon files
4.5 years ago by 2405592M ▴ 150
0
votes
0
replies
516
views
Using RNA-seq to measure SCU
RNA-Seq Synonymous codon usage mapping
4.6 years ago by 2405592M ▴ 150
3
votes
1
reply
4.9k
views
limma::removeBatchEffect and using DESeq2 for RNA-seq differential expression
limma::removeBatchEffect DESeq2
updated 4.8 years ago by ▴ 190 • written 4.8 years ago by ▴ 150
1
vote
1
reply
2.4k
views
multiple comparisons in DESeq2
DESeq2 RNA-Seq
updated 5.1 years ago by 14k • written 5.1 years ago by ▴ 150
0
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1
reply
3.1k
views
Comment: C: How can I get Ensembl CDS / 3'UTR and 5'UTR sequences
5.1 years ago by 2405592M ▴ 150
2
votes
3
replies
3.1k
views
How can I get Ensembl CDS / 3'UTR and 5'UTR sequences
RNA-Seq codon usage ensembl sequence
updated 5.1 years ago by 24k • written 5.1 years ago by ▴ 150
0
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0
replies
2.1k
views
Comment: C: Dealing with ensembl gene ID and enterez ID duplicates
5.1 years ago by 2405592M ▴ 150
0
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1
reply
2.1k
views
Dealing with ensembl gene ID and enterez ID duplicates
RNA-Seq DESeq2 annotation
5.1 years ago by 2405592M ▴ 150
0
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0
replies
1.4k
views
Comment: C: What is the gold standard for the one-to-many relationships in BioMart retrieved
5.1 years ago by 2405592M ▴ 150
1
vote
2
replies
1.4k
views
What is the gold standard for the one-to-many relationships in BioMart retrieved annotations and adding them to a DESeq2 results table
BioMart one-to-many relationships DESeq2
updated 5.3 years ago by ★ 2.1k • written 5.3 years ago by ▴ 150
0
votes
0
replies
908
views
Comment: C: Trouble manipulating dataset
5.6 years ago by 2405592M ▴ 150
4
votes
3
replies
908
views
Trouble manipulating dataset
RNA-Seq R
updated 5.6 years ago by ★ 1.3k • written 5.6 years ago by ▴ 150
6
votes
3
replies
15k
views
Adding asterisks to a ggplot2 bar plot to show significance
RNA-Seq ggplot2 R
updated 5.6 years ago by 12k • written 5.6 years ago by ▴ 150
1
vote
1
reply
1.9k
views
Normalization using RNA custom oligo spike-ins
RNA-Seq Normalization spike-in
updated 5.8 years ago by 10k • written 5.8 years ago by ▴ 150
28
votes
3
replies
8.0k
views
What are SizeFactors
RNA-Seq R normalization
5.8 years ago by 2405592M ▴ 150
0
votes
1
reply
2.1k
views
How to generate custom fasta and gtf files for RNA spike-ins
RNA-Seq spike-in
updated 6.0 years ago by ★ 3.9k • written 6.0 years ago by ▴ 150
0
votes
1
reply
3.6k
views
Comment: A: How to process paired end data (using fastq-dump) to get Fw and Rv files
6.3 years ago by 2405592M ▴ 150
9
votes
7
replies
3.6k
views
How to process paired end data (using fastq-dump) to get Fw and Rv files
Fastq RNA-Seq SRAtoolkit trimmomatic
updated 17 months ago by 44k • written 6.5 years ago by ▴ 150
0
votes
1
reply
3.5k
views
Comment: C: How do you convert featureCounts output into composition of mapped reads by RNA
6.3 years ago by 2405592M ▴ 150
1
vote
6
replies
3.5k
views
How do you convert featureCounts output into composition of mapped reads by RNA class?
RNA-Seq featureCounts DESeq2
6.3 years ago by 2405592M ▴ 150
0
votes
2
replies
3.5k
views
Comment: A: How do you convert featureCounts output into composition of mapped reads by RNA
6.3 years ago by 2405592M ▴ 150
0
votes
1
reply
6.6k
views
Comment: C: featureCounts output processing (command line)
6.3 years ago by 2405592M ▴ 150
0
votes
0
replies
6.6k
views
Comment: C: featureCounts output processing (command line)
6.3 years ago by 2405592M ▴ 150
1
vote
1
reply
6.6k
views
Comment: C: featureCounts output processing (command line)
6.3 years ago by 2405592M ▴ 150
6
votes
7
replies
6.6k
views
featureCounts output processing (command line)
RNA-Seq command line featureCounts
updated 6.3 years ago by 35k • written 6.3 years ago by ▴ 150
0
votes
2
replies
3.6k
views
Comment: C: How to process paired end data (using fastq-dump) to get Fw and Rv files
6.5 years ago by 2405592M ▴ 150
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