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Comment: Comment: Bulk converting superseded TCGA UUIDs
5 months ago by loughrae ▴ 90
0
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4
replies
514
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Bulk converting superseded TCGA UUIDs
R TCGAutils TCGA
updated 5 months ago by ★ 1.2k • written 5 months ago by ▴ 90
0
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1
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799
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Comment: Comment: Non-zero expression counts from deleted genes
20 months ago by loughrae ▴ 90
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3
replies
799
views
Non-zero expression counts from deleted genes
TPM RNA-seq copy-number TCGA
updated 20 months ago by 4.0k • written 20 months ago by ▴ 90
1
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1
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535
views
Can you compare the abundance of different proteins within a sample?
CCLE TCGA proteomics
updated 2.5 years ago by 85k • written 2.5 years ago by ▴ 90
0
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0
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507
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TCGA patient death dates
cancer TCGA data clinical
3.1 years ago by loughrae ▴ 90
0
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0
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2.1k
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Comment: Comment: 20,000 Ensembl gene IDs with external gene name in hg19 but not in hg38
3.6 years ago by loughrae ▴ 90
0
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1
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2.1k
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Comment: Comment: 20,000 Ensembl gene IDs with external gene name in hg19 but not in hg38
3.6 years ago by loughrae ▴ 90
2
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4
replies
2.1k
views
20,000 Ensembl gene IDs with external gene name in hg19 but not in hg38
ensembl biomart
3.6 years ago by loughrae ▴ 90
4
votes
6
replies
5.8k
views
Understanding TCGA's ASCAT copy number data
tcga ascat copy number
updated 3.4 years ago by 88k • written 3.7 years ago by ▴ 90
0
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1
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2.4k
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Comment: C: Problems specifying data.type and sample.type in TCGAbiolinks GDCquery
3.7 years ago by loughrae ▴ 90
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3
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2.4k
views
Problems specifying data.type and sample.type in TCGAbiolinks GDCquery
tcga tcgabiolinks r
updated 9 months ago by ▴ 10 • written 3.7 years ago by ▴ 90
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1
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1.2k
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Comment: C: to annotate BEDPE files
3.7 years ago by loughrae ▴ 90
1
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0
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1.9k
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Comment: C: Getting standard 12-column format for a list of genes
3.7 years ago by loughrae ▴ 90
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0
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5.8k
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Comment: C: Understanding TCGA's ASCAT copy number data
3.7 years ago by loughrae ▴ 90
0
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2
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5.8k
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Comment: C: Understanding TCGA's ASCAT copy number data
3.7 years ago by loughrae ▴ 90
4
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0
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2.8k
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Answer: A: Ggplot2 + Gene Labels
3.7 years ago by loughrae ▴ 90
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1
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2.8k
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Comment: C: Ggplot2 + Gene Labels
3.7 years ago by loughrae ▴ 90
1
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0
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830
views
Answer: A: Error in getBM: accessing Ensembl annotation with biomaRt
3.7 years ago by loughrae ▴ 90
1
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0
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977
views
Answer: A: Retrieve initial query in getBM()
3.8 years ago by loughrae ▴ 90
0
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0
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2.0k
views
Comment: C: How to interpret the gene level copy number file generated by ASCAT2 on GDC?
3.8 years ago by loughrae ▴ 90
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