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Comment: Comment: PanDepth, an ultra-fast and efficient genomic tool for coverage calculation
9 months ago by jordi.planells ▴ 480
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2.5k
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Comment: Comment: PanDepth, an ultra-fast and efficient genomic tool for coverage calculation
9 months ago by jordi.planells ▴ 480
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1.3k
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Comment: Comment: --normalizeUsing RPGC
10 months ago by jordi.planells ▴ 480
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1.3k
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Comment: Comment: --normalizeUsing RPGC
10 months ago by jordi.planells ▴ 480
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377
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Deeptools clustering differs when clustering sample as standalone and together with other samples
deepTools
20 months ago by jordi.planells ▴ 480
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544
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Understanding HiC compartimentalization data
HiC
3.0 years ago by jordi.planells ▴ 480
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Comment: Comment: Picard MarkDuplicates failing without error message
3.4 years ago by jordi.planells ▴ 480
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2.3k
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Comment: Comment: Picard MarkDuplicates failing without error message
3.4 years ago by jordi.planells ▴ 480
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1.0k
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Comment: Comment: How to achieve the goal "only genes with non-zero expression values in at least
3.6 years ago by jordi.planells ▴ 480
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1.2k
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Comment: Comment: how to create matrix from row data.
3.6 years ago by jordi.planells ▴ 480
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1.0k
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Answer: Answer: How to add GO annotation terms (molecular function, component, biological proces
3.6 years ago by jordi.planells ▴ 480
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2.2k
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Comment: C: Bowtie2: Mate file error & internal exception
3.7 years ago by jordi.planells ▴ 480
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1.3k
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Comment: C: Select and keep only some results from DESEq2
3.7 years ago by jordi.planells ▴ 480
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1.3k
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Comment: C: Select and keep only some results from DESEq2
3.7 years ago by jordi.planells ▴ 480
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1.2k
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Comment: C: Read count using htseq-count.
3.7 years ago by jordi.planells ▴ 480
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1.2k
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Comment: C: Read count using htseq-count.
3.7 years ago by jordi.planells ▴ 480
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1.5k
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Comment: C: Getting the fasta format of a list of genes
3.7 years ago by jordi.planells ▴ 480
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1.0k
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Answer: A: The parameter of HISAT2 and samtools
3.7 years ago by jordi.planells ▴ 480
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1.3k
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Comment: C: Change sample order in plotHeatmap?
3.7 years ago by jordi.planells ▴ 480
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1.3k
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Comment: C: Change sample order in plotHeatmap?
3.7 years ago by jordi.planells ▴ 480
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990
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Comment: C: Calculating fold change...CONFUSION
3.8 years ago by jordi.planells ▴ 480
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1.7k
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Answer: A: Filtering of transcripts with more than two exons
3.8 years ago by jordi.planells ▴ 480
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Comment: C: DESeq2 for DEG in R
3.8 years ago by jordi.planells ▴ 480
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1.3k
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Comment: C: DESeq2 for DEG in R
3.8 years ago by jordi.planells ▴ 480
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1.4k
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Comment: C: Huge difference between P and adj P value
3.8 years ago by jordi.planells ▴ 480
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1.5k
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Comment: C: bigwigs to reads in peaks
3.8 years ago by jordi.planells ▴ 480
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1.5k
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Comment: C: bigwigs to reads in peaks
3.8 years ago by jordi.planells ▴ 480
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993
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Answer: A: How to map reads onto human hg38 gene body regions instead of whole genome?
3.9 years ago by jordi.planells ▴ 480
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1.5k
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Comment: C: Interpretation of PCA plot
4.0 years ago by jordi.planells ▴ 480
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1.5k
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Comment: C: Interpretation of PCA plot
4.0 years ago by jordi.planells ▴ 480
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1
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1.9k
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Comment: C: No coverage in macs2 peak summit!
4.0 years ago by jordi.planells ▴ 480
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1.1k
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Comment: C: Principle component analysis
4.0 years ago by jordi.planells ▴ 480
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2
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1.1k
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Comment: C: Principle component ananlysis
4.0 years ago by jordi.planells ▴ 480
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921
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Comment: C: DESeq2 discrepancy between analysis.
4.0 years ago by jordi.planells ▴ 480
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2
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921
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DESeq2 discrepancy between analysis.
R RNA-Seq DESeq2
updated 4.0 years ago by 14k • written 4.0 years ago by ▴ 480
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1.4k
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Comment: C: How to evaluate gene expression
4.0 years ago by jordi.planells ▴ 480
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1.4k
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Comment: C: How to evaluate gene expression
4.0 years ago by jordi.planells ▴ 480
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1.4k
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Comment: C: How to evaluate gene expression
4.0 years ago by jordi.planells ▴ 480
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1.4k
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Answer: A: Calculate library complexity for Chip sep data
4.0 years ago by jordi.planells ▴ 480
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1
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10k
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Comment: C: Removing fastq duplicates
updated 4.0 years ago by 44k • written 4.0 years ago by ▴ 480
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1.0k
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Comment: C: how to get input file of closest-features a bed-format file
4.0 years ago by jordi.planells ▴ 480
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1.0k
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Comment: C: how to get input file of closest-features a bed-format file
4.0 years ago by jordi.planells ▴ 480
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572
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Answer: A: Find cooccurences of factors across multiple files
4.0 years ago by jordi.planells ▴ 480
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1.2k
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Comment: C: Knock out genes and TPM
4.0 years ago by jordi.planells ▴ 480
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1.2k
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Comment: C: Knock out genes and TPM
4.0 years ago by jordi.planells ▴ 480
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1.2k
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Comment: C: Knock out genes and TPM
4.0 years ago by jordi.planells ▴ 480
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1.1k
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Answer: A: How to extract upstream and downstream of lncRNA in particular range?
4.0 years ago by jordi.planells ▴ 480
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1.0k
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Comment: A: how to get input file of closest-features a bed-format file
4.0 years ago by jordi.planells ▴ 480
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1.5k
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Answer: A: Pilon software installation
4.0 years ago by jordi.planells ▴ 480
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1.5k
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Answer: A: intersect two file
4.0 years ago by jordi.planells ▴ 480
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