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631
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Is it relevant to calculate alpha and beta diversity indices from MAGs-abundances matrix ?
metagenomics statistics shotgun biostatistics
2.1 years ago by vin.darb ▴ 300
4
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0
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1.1k
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Answer: Answer: Are alternative splicing analysis and differential expression analysis of RNA-se
3.9 years ago by vin.darb ▴ 300
1
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1
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3.6k
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Perform two-way ANOSIM in R
metabarcoding statistics metagenomic R
updated 4.5 years ago by ▴ 10 • written 5.2 years ago by ▴ 300
1
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0
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1.1k
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Answer: A: How to map a set of genes on a circular representation of DNA ?
5.2 years ago by vin.darb ▴ 300
2
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8
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3.4k
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Some problems with DEXSEQ analyse
RNA-Seq isoform expression DEXSEQ
updated 5.2 years ago by ★ 4.1k • written 6.0 years ago by ▴ 300
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1
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1.4k
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Comment: C: sed or awk command
5.6 years ago by vin.darb ▴ 300
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1
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1.4k
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Answer: A: sed or awk command
5.6 years ago by vin.darb ▴ 300
1
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1
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36k
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Comment: C: How is the design in DESeq2 work?
5.6 years ago by vin.darb ▴ 300
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1
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4.3k
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Answer: A: Problem to run checkm.
5.7 years ago by vin.darb ▴ 300
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2
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4.6k
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Comment: C: Adding p-value to box plot
updated 5.7 years ago by 44k • written 5.7 years ago by ▴ 300
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1
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1.5k
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Answer: A: normalization with RPKM
5.7 years ago by vin.darb ▴ 300
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1
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4.4k
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Comment: C: Analysis rMATS of RNA Seq data
5.7 years ago by vin.darb ▴ 300
2
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1
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13k
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Answer: A: STAR mapping pipeline with 2-pass for multiple samples?
5.7 years ago by vin.darb ▴ 300
1
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0
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6.3k
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Comment: C: How to extract reads which contain specific sequence from fastq file
5.7 years ago by vin.darb ▴ 300
0
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1
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4.4k
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Answer: A: Analysis rMATS of RNA Seq data
5.7 years ago by vin.darb ▴ 300
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0
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2.6k
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Comment: C: How to build a transcriptome reference ?
5.7 years ago by vin.darb ▴ 300
4
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2
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2.6k
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How to build a transcriptome reference ?
RNA-Seq salmon
5.7 years ago by vin.darb ▴ 300
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1
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2.1k
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Comment: C: How to do a benchmark analysis of RNA-Seq tools ?
5.7 years ago by vin.darb ▴ 300
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2
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2.2k
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Answer: A: RNAseq raw read counts for measuring relative gene expression?
5.7 years ago by vin.darb ▴ 300
9
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8
replies
2.1k
views
How to do a benchmark analysis of RNA-Seq tools ?
transcription splicing RNA-Seq
updated 20 months ago by 44k • written 5.7 years ago by ▴ 300
0
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1
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2.1k
views
Comment: A: How to do a benchmark analysis of RNA-Seq tools ?
5.7 years ago by vin.darb ▴ 300
3
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0
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1.8k
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Answer: A: how to generate a bai ?
updated 5.7 years ago by 44k • written 5.7 years ago by ▴ 300
1
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0
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1.5k
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Answer: A: Standard value of quality score and sequence length in QC trimming of RNA-Seq
5.7 years ago by vin.darb ▴ 300
0
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0
replies
1.1k
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Answer: A: Arabidopsis thaliana genome annotation
5.7 years ago by vin.darb ▴ 300
4
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1
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1.5k
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Answer: A: Arabidopsis thaliana transcriptome annotation
5.7 years ago by vin.darb ▴ 300
1
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1
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4.9k
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Comment: C: [rMATS] Number of AS Events from one sample
5.9 years ago by vin.darb ▴ 300
0
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1
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4.9k
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Comment: C: [rMATS] Number of AS Events from one sample
5.9 years ago by vin.darb ▴ 300
1
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0
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4.9k
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Comment: C: [rMATS] Number of AS Events from one sample
5.9 years ago by vin.darb ▴ 300
0
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1
reply
4.9k
views
Comment: C: [rMATS] Number of AS Events from one sample
5.9 years ago by vin.darb ▴ 300
7
votes
11
replies
4.9k
views
[rMATS] Number of AS Events from one sample
splicing RNA-Seq NGS
updated 5.9 years ago by ★ 4.1k • written 5.9 years ago by ▴ 300
1
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0
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15k
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Answer: A: How should I handle the raw reads with failed per base sequence content in fastQ
5.9 years ago by vin.darb ▴ 300
0
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0
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1.5k
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How to analyse a list of DEG (differentially expressed genes) and DASG (differentially alternatively splices genes)
RNA-Seq deg ngs analysis
5.9 years ago by vin.darb ▴ 300
0
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0
replies
2.4k
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Comment: A: Running RNA mats pipeline using fastq files as input ,unable to generate star in
5.9 years ago by vin.darb ▴ 300
0
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0
replies
3.4k
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Comment: C: Some problems with DEXSEQ analyse
6.0 years ago by vin.darb ▴ 300
0
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1
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3.4k
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Comment: C: Some problems with DEXSEQ analyse
6.0 years ago by vin.darb ▴ 300
0
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1
reply
3.4k
views
Comment: C: Some problems with DEXSEQ analyse
6.0 years ago by vin.darb ▴ 300
0
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1
reply
5.2k
views
Comment: C: How to parallelize a rule in Snakemake ?
6.0 years ago by vin.darb ▴ 300
5
votes
3
replies
5.2k
views
How to parallelize a rule in Snakemake ?
snakemake pipeline RNA-Seq NGS
6.0 years ago by vin.darb ▴ 300
0
votes
1
reply
10k
views
Comment: C: input for rMATS
6.0 years ago by vin.darb ▴ 300
0
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1
reply
10k
views
Comment: A: Help! How to plot RNASeq data in PCA
6.0 years ago by vin.darb ▴ 300
8
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5
replies
4.2k
views
Scripting a NGS analysis pipeline, in Shell or Python ?
RNA-Seq Bash Python Analysis NGS
6.1 years ago by vin.darb ▴ 300
0
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0
replies
4.2k
views
Comment: A: Scripting a NGS analysis pipeline, in Shell or Python ?
6.1 years ago by vin.darb ▴ 300
2
votes
1
reply
1.8k
views
How to integrate GSEA (genes) and MSEA (metabolites) analysis ?
gene metabolites analysis RNA-Seq
updated 6.2 years ago by ▴ 120 • written 6.3 years ago by ▴ 300
0
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1
reply
1.8k
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Question about Differential Gene Expression Analysis with GEO2R
GEO2R Gene Differential Expression Analysis
6.2 years ago by vin.darb ▴ 300
0
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4
replies
3.1k
views
How to do gene functional annotation ?
genome sequencing gene Annotation
updated 6.5 years ago by 47k • written 6.6 years ago by ▴ 300
0
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3
replies
1.4k
views
How to have the abundance of my bacterium of interest in a metagenomic dataset
gene genome next-gen
updated 6.6 years ago by ★ 1.1k • written 6.6 years ago by ▴ 300
0
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0
replies
3.1k
views
Comment: C: How to gene functional annotation ?
6.6 years ago by vin.darb ▴ 300
0
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0
replies
1.2k
views
Comment: C: How to improve single-cells data ?
6.7 years ago by vin.darb ▴ 300
0
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1
reply
1.2k
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Comment: C: How to improve single-cells data ?
6.7 years ago by vin.darb ▴ 300
0
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5
replies
1.2k
views
How to improve single-cells data ?
genome sequence Assembly next-gen
6.7 years ago by vin.darb ▴ 300
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