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Comment: Comment: removing adaptor
3.8 years ago by prabin.dm ▴ 260
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removing adaptor
fastqc
updated 3.8 years ago by 152k • written 3.8 years ago by ▴ 260
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Answer: A: Center multiple pheatmap
4.5 years ago by prabin.dm ▴ 260
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1.4k
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Comment: C: Why removing sample from one group in DESeqDataSet changes DGE of other two grou
4.5 years ago by prabin.dm ▴ 260
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2
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Why removing sample from one group in DESeqDataSet changes DGE of other two groups ?
RNA-Seq DESeq2
updated 4.5 years ago by 9.0k • written 4.5 years ago by ▴ 260
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Comment: C: Correlation vs differential expression testing
5.3 years ago by prabin.dm ▴ 260
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1.8k
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Comment: C: Correlation vs differential expression testing
5.3 years ago by prabin.dm ▴ 260
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1.8k
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Correlation vs differential expression testing
qpcr
updated 5.3 years ago by ▴ 390 • written 5.3 years ago by ▴ 260
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Comment: C: How to assign matching unique IDs to two datasets so that I can merge them corre
6.0 years ago by prabin.dm ▴ 260
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Answer: A: p53 mutations for NCI60 cell lines
6.0 years ago by prabin.dm ▴ 260
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7.9k
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Comment: C: DESeq2 coutoff or LFC
6.0 years ago by prabin.dm ▴ 260
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1
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Answer: A: converting mouse emsembl gene IDs to Gene names by bioMart and gconvert with n
6.0 years ago by prabin.dm ▴ 260
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Answer: A: converting mouse emsembl gene IDs to Gene names by bioMart and gconvert with n
6.0 years ago by prabin.dm ▴ 260
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1
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15k
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Comment: C: convering mouse emsembl gene IDs to Gene names by bioMart and gconvert with no
6.0 years ago by prabin.dm ▴ 260
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1
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7.9k
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Comment: C: DESeq2 coutoff or LFC
6.0 years ago by prabin.dm ▴ 260
2
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1
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1.1k
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Answer: C: inherited cancer gene
6.0 years ago by prabin.dm ▴ 260
4
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1
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7.9k
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Answer: A: DESeq2 coutoff or LFC
6.0 years ago by prabin.dm ▴ 260
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1
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2.3k
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Comment: C: DESEQ2 Design formula testing cell type across condition
6.0 years ago by prabin.dm ▴ 260
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1
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5.7k
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Answer: A: adding batch variable in colData(dds)
6.1 years ago by prabin.dm ▴ 260
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2.9k
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Answer: C: Fail to delete temporary folder
6.1 years ago by prabin.dm ▴ 260
3
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1
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2.9k
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Fail to delete temporary folder
star RSEM shell
6.1 years ago by prabin.dm ▴ 260
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1
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2.5k
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RSEM with STAR aligment
rsem star
updated 6.3 years ago by ▴ 10 • written 6.5 years ago by ▴ 260
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1
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5.7k
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Comment: C: Batch correction: Before and After Visualisation
6.3 years ago by prabin.dm ▴ 260
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3
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5.7k
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Batch correction: Before and After Visualisation
RNA-Seq Combat svaseq DESeq2
6.3 years ago by prabin.dm ▴ 260
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2
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4.1k
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Do STAR genome index and RSEM reference need to be from same files?
RNA-Seq RSEM STAR
updated 6.5 years ago by 48k • written 6.5 years ago by ▴ 260
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2.8k
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Comment: C: STAR alignment error: quantmod not found
6.5 years ago by prabin.dm ▴ 260
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4
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2.8k
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STAR alignment error: quantmod not found
STAR RNAseq alignment
updated 6.5 years ago by 105k • written 6.5 years ago by ▴ 260
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2
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1.6k
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DGE Analysis between 3 conditions
RNA-Seq DESeq edgeR
6.5 years ago by prabin.dm ▴ 260
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0
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12k
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Comment: C: STAR alignment error: ERROR in input reads
6.5 years ago by prabin.dm ▴ 260
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12
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12k
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STAR alignment error: ERROR in input reads
fastq STAR RNA-Seq
6.5 years ago by prabin.dm ▴ 260
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12k
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Comment: C: FASTQ file format
6.5 years ago by prabin.dm ▴ 260
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1
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12k
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Comment: C: FASTQ file format
6.5 years ago by prabin.dm ▴ 260
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2
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12k
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Comment: C: FASTQ file format
6.5 years ago by prabin.dm ▴ 260
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0
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12k
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Comment: C: FASTQ file format
6.5 years ago by prabin.dm ▴ 260
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1.6k
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Comment: C: SimpleRleList to GRanges
6.7 years ago by prabin.dm ▴ 260
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2
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1.6k
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SimpleRleList to GRanges
ChIP-Seq rtracklayer
6.7 years ago by prabin.dm ▴ 260
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1
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4.5k
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Comment: C: RSEM calculate expression troubleshoot
6.9 years ago by prabin.dm ▴ 260
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4.5k
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Comment: C: RSEM calculate expression troubleshoot
6.9 years ago by prabin.dm ▴ 260
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0
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4.5k
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Comment: C: RSEM calculate expression troubleshoot
6.9 years ago by prabin.dm ▴ 260
4
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8
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4.5k
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RSEM calculate expression troubleshoot
RNA-Seq RSEM
6.9 years ago by prabin.dm ▴ 260
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1
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3.0k
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Comment: C: STAR index preparation fails
7.0 years ago by prabin.dm ▴ 260
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3.0k
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Comment: C: STAR index preparation fails
7.0 years ago by prabin.dm ▴ 260
2
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4
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3.0k
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STAR index preparation fails
RNA-Seq STAR
updated 7.0 years ago by 35k • written 7.0 years ago by ▴ 260
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