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Comment: Comment: How to run bandage with Trycycler fasta output?
3.2 years ago by greyman ▴ 190
0
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1.9k
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Comment: Comment: How to run bandage with Trycycler fasta output?
3.2 years ago by greyman ▴ 190
1
vote
5
replies
1.9k
views
How to run bandage with Trycycler fasta output?
sibeliaz gfa bandage fasta trycycler
updated 3.2 years ago by 3.9k • written 3.2 years ago by ▴ 190
0
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0
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1.4k
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Comment: Comment: Why he/she disabled the base calling in Guppy?
3.2 years ago by greyman ▴ 190
2
votes
4
replies
1.4k
views
Why he/she disabled the base calling in Guppy?
guppy long-read nanopore base calling
3.2 years ago by greyman ▴ 190
11
votes
2
replies
6.0k
views
OrthoFinder: Diamond or Blast? Which is better?
orthofinder blast sensitivity ortholog
updated 3.2 years ago by ★ 2.9k • written 4.0 years ago by ▴ 190
0
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1
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1.9k
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Comment: Comment: Is BLASTp the quickest method to get a rough idea on ortholog from protein seque
4.0 years ago by greyman ▴ 190
0
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1
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1.9k
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Comment: Comment: Is BLASTp the quickest method to get a rough idea on ortholog from protein seque
4.0 years ago by greyman ▴ 190
1
vote
6
replies
1.9k
views
Is BLASTp the quickest method to get a rough idea on ortholog from protein sequence?
blastp ortholog homolog blast
updated 4.0 years ago by 15k • written 4.0 years ago by ▴ 190
1
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0
replies
1.6k
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Comment: Comment: Bedops split bed coordinates with zero based half opened format
4.1 years ago by greyman ▴ 190
6
votes
4
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1.6k
views
Bedops split bed coordinates with zero based half opened format
DNA bedops STREME
updated 4.0 years ago by 45k • written 4.1 years ago by ▴ 190
1
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0
replies
1.6k
views
Comment: Comment: Bedops split bed coordinates with zero based half opened format
updated 4.0 years ago by 45k • written 4.1 years ago by ▴ 190
0
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1
reply
1.5k
views
Comment: Comment: No output produced from searching against known motif database in CentriMo
4.1 years ago by greyman ▴ 190
2
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3
replies
1.5k
views
No output produced from searching against known motif database in CentriMo
centrimo motif meme tomtom TFBS
updated 4.1 years ago by ★ 1.6k • written 4.1 years ago by ▴ 190
2
votes
2
replies
1.4k
views
NNNNNN in genomic file
bedtools promoter TFBS bedops
updated 24 months ago by 45k • written 4.1 years ago by ▴ 190
1
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1
reply
1.1k
views
Trimming gene coding sequence for finding TFBS
tfbs transcription binding rna-seq
4.1 years ago by greyman ▴ 190
0
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2
replies
1.2k
views
Suggestion for modelling transcriptomics analysis
rnaseq wgcna linearmodel deseq2
updated 4.1 years ago by 45k • written 4.2 years ago by ▴ 190
1
vote
2
replies
1.4k
views
Can I control the exposure time as a batch effect?
batch-effect RNA-seq time-series deseq2
updated 2.1 years ago by 45k • written 4.2 years ago by ▴ 190
1
vote
1
reply
985
views
GO analysis: Why did gene set with high cluster frequency from up-regulation category will disappear from GO analysis of all DEGs ?
GO GSEA RNA-Seq sequencing
4.3 years ago by greyman ▴ 190
19
votes
7
replies
4.0k
views
6 follow
Why are we assuming genes are not differentially expressed?
rna-seq
4.3 years ago by greyman ▴ 190
0
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2
replies
2.4k
views
How to make SBGNview accepts custom sbgn input or kegg pathway? ID mapping tables between gene IDs and SBGN file glyph IDs.
sbgnview pathview sbgn metabolomics
updated 2.0 years ago by 45k • written 4.3 years ago by ▴ 190
0
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0
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3.7k
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Comment: C: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ S
4.3 years ago by greyman ▴ 190
0
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0
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3.7k
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Comment: C: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ S
4.3 years ago by greyman ▴ 190
0
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0
replies
3.7k
views
Comment: C: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ S
4.3 years ago by greyman ▴ 190
0
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1
reply
3.7k
views
Comment: A: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ S
4.3 years ago by greyman ▴ 190
0
votes
1
reply
3.7k
views
Comment: A: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ S
4.3 years ago by greyman ▴ 190
0
votes
0
replies
3.7k
views
Comment: A: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ S
4.3 years ago by greyman ▴ 190
0
votes
0
replies
3.7k
views
Comment: A: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ S
4.3 years ago by greyman ▴ 190
0
votes
0
replies
1.9k
views
Comment: C: Limma: how to get the overall logFC from a linear model without contrast?
4.3 years ago by greyman ▴ 190
0
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1
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1.9k
views
Comment: C: Limma: how to get the overall logFC from a linear model without contrast?
4.3 years ago by greyman ▴ 190
4
votes
4
replies
1.9k
views
Limma: how to get the overall logFC from a linear model without contrast?
limma metabolites metabolomics linear model
updated 4.3 years ago by 35k • written 4.3 years ago by ▴ 190
0
votes
0
replies
1.4k
views
VQSR with extremely low TPs (<0.01), How low can tranche goes?
vqsr exome GATK4 SNP
updated 6.2 years ago by 88k • written 6.2 years ago by ▴ 190
0
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0
replies
2.1k
views
Comment: C: How to create 1000G_phase1.snps.high_confidence.hg19.sites.vcf ?
6.2 years ago by greyman ▴ 190
1
vote
2
replies
2.1k
views
How to create 1000G_phase1.snps.high_confidence.hg19.sites.vcf ?
snp GATK
updated 2.2 years ago by 45k • written 6.3 years ago by ▴ 190
5
votes
5
replies
2.4k
views
Colour doesn't change in Manhanttan plot.
R gwas qqman manhattanplot
updated 6.4 years ago by 12k • written 6.4 years ago by ▴ 190
3
votes
1
reply
2.4k
views
Answer: A: Colour doesn't change in Manhanttan plot.
updated 6.4 years ago by 12k • written 6.4 years ago by ▴ 190
1
vote
1
reply
2.4k
views
Comment: C: Colour doesn't change in Manhanttan plot.
6.4 years ago by greyman ▴ 190
20
votes
21
replies
2.5k
views
6 follow
How to work with 2.6 TB genome data which is deposited in the server?
sequencing exome fastq
updated 6.6 years ago by 20 • written 6.9 years ago by ▴ 190
0
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1
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4.4k
views
Comment: C: Can we find SNP from fasta sequences ?
6.9 years ago by greyman ▴ 190
6
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7
replies
4.4k
views
Can we find SNP from fasta sequences ?
SNP fasta
6.9 years ago by greyman ▴ 190
0
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0
replies
2.5k
views
Comment: C: How to work with 2.6 TB genome data which is deposited in the server?
6.9 years ago by greyman ▴ 190
0
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1
reply
2.5k
views
Comment: C: How to work with 2.6 TB genome data which is deposited in the server?
6.9 years ago by greyman ▴ 190
1
vote
1
reply
2.5k
views
Comment: C: How to work with 2.6 TB genome data which is deposited in the server?
6.9 years ago by greyman ▴ 190
0
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1
reply
1.9k
views
Comment: C: How to get quality output for exome assembly ?
6.9 years ago by greyman ▴ 190
0
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0
replies
2.5k
views
Comment: C: How to work with 2.6 TB genome data which is deposited in the server?
6.9 years ago by greyman ▴ 190
0
votes
1
reply
1.9k
views
Comment: C: How to get quality output for exome assembly ?
6.9 years ago by greyman ▴ 190
4
votes
7
replies
1.9k
views
How to get quality output for exome assembly ?
sequencing exome samtools
6.9 years ago by greyman ▴ 190
0
votes
0
replies
2.5k
views
Comment: C: How to work with 2.6 TB genome data which is deposited in the server?
6.9 years ago by greyman ▴ 190
0
votes
1
reply
2.5k
views
Comment: C: How to work with 2.6 TB genome data which is deposited in the server?
6.9 years ago by greyman ▴ 190
0
votes
1
reply
2.5k
views
Comment: C: How to work with 2.6 TB genome data which is deposited in the server?
6.9 years ago by greyman ▴ 190
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