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Normalizing AMR gene count data
abundance RGI
updated 13 months ago by 45k • written 13 months ago by ▴ 110
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1
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1.1k
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Comment: Comment: Less number of total Species than Genus in 16S data
18 months ago by arshad1292 ▴ 110
2
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3
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1.1k
views
Less number of total Species than Genus in 16S data
microbiome Species Genus ASV 16S
updated 18 months ago by 8.8k • written 18 months ago by ▴ 110
0
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0
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736
views
NMDS plotting issue
NMDS metagenomic
2.0 years ago by arshad1292 ▴ 110
6
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3
replies
1.2k
views
grep value from html file
cat script commandline shell grep
updated 2.1 years ago by 15k • written 2.1 years ago by ▴ 110
4
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3
replies
1.5k
views
comparing two metagenomics data sets
metagenomics
updated 2.4 years ago by ★ 29k • written 2.4 years ago by ▴ 110
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0
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603
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How to interpret different reduced models in time series analysis with DESeq2?
time-series DESeq2
2.6 years ago by arshad1292 ▴ 110
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0
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2.1k
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Comment: Comment: Interpreting time-series analysis with DESeq2 output
2.6 years ago by arshad1292 ▴ 110
0
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1
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2.1k
views
Comment: Comment: Interpreting time-series analysis with DESeq2 output
2.6 years ago by arshad1292 ▴ 110
0
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0
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2.1k
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Comment: Comment: Interpreting time-series analysis with DESeq2 output
2.6 years ago by arshad1292 ▴ 110
0
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2
replies
1.3k
views
labelling selected genes in volcano plot
RNAseq R plot volcano
updated 2.6 years ago by 88k • written 2.6 years ago by ▴ 110
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2
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2.1k
views
Comment: Comment: Interpreting time-series analysis with DESeq2 output
2.6 years ago by arshad1292 ▴ 110
1
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8
replies
2.1k
views
Interpreting time-series analysis with DESeq2 output
time-series DESeq2
2.6 years ago by arshad1292 ▴ 110
0
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0
replies
1.1k
views
Comment: Comment: How to convert trinotate results into GFF3
2.6 years ago by arshad1292 ▴ 110
1
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2
replies
1.1k
views
How to convert trinotate results into GFF3
gff3 gtf trinotate
2.6 years ago by arshad1292 ▴ 110
1
vote
1
reply
805
views
time-series analysis with DESeq2
time-series multifactorial R DESeq2
updated 2.6 years ago by ▴ 40 • written 2.6 years ago by ▴ 110
0
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2
replies
1.3k
views
creating a list of genes in python
rnaseq python
updated 2.6 years ago by ▴ 100 • written 2.6 years ago by ▴ 110
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0
replies
582
views
how to set zorder for volcano plot
matplotlib python zorder volcano
2.6 years ago by arshad1292 ▴ 110
0
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0
replies
942
views
Comment: Comment: rename so that dot (.) is replaced with underscore (_)
2.7 years ago by arshad1292 ▴ 110
1
vote
2
replies
942
views
rename so that dot (.) is replaced with underscore (_)
rename linux mv
2.7 years ago by arshad1292 ▴ 110
0
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0
replies
822
views
Comment: Comment: creating a txt file with absolute path to each directory
2.7 years ago by arshad1292 ▴ 110
1
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2
replies
822
views
creating a txt file with absolute path to each directory
shell linux script
2.7 years ago by arshad1292 ▴ 110
0
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0
replies
1.0k
views
Comment: Comment: renaming files and including folder/directory name in it
2.7 years ago by arshad1292 ▴ 110
0
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2
replies
1.0k
views
renaming files and including folder/directory name in it
rename loop mv
2.7 years ago by arshad1292 ▴ 110
0
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0
replies
2.4k
views
Comment: Comment: problem with GTF file
2.8 years ago by arshad1292 ▴ 110
0
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2
replies
2.4k
views
problem with GTF file
gtf repeatmasker gff AGAT gffread
2.8 years ago by arshad1292 ▴ 110
0
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1
reply
2.3k
views
Comment: Comment: Confused about bin completion and contamination
3.0 years ago by arshad1292 ▴ 110
3
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3
replies
2.3k
views
Confused about bin completion and contamination
metagenomics bins metagenome
updated 3.0 years ago by ★ 29k • written 3.0 years ago by ▴ 110
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0
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1.1k
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Comment: Comment: Why we allow contamination during binning?
3.2 years ago by arshad1292 ▴ 110
3
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2
replies
1.1k
views
Why we allow contamination during binning?
completion MAGs contamination metagenomic metagenome
3.2 years ago by arshad1292 ▴ 110
2
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7
replies
2.1k
views
6 follow
Finding closest genome from genbank
bacterial genome blast genbank
updated 3.3 years ago by 9.2k • written 3.3 years ago by ▴ 110
0
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0
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2.1k
views
Answer: Answer: Finding closest genome from genbank
3.3 years ago by arshad1292 ▴ 110
0
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1
reply
2.1k
views
Comment: Comment: Finding closest genome from genbank
3.3 years ago by arshad1292 ▴ 110
0
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0
replies
1.8k
views
Comment: Comment: Can I use CD-HIT package for shotgun sequencing data (metagenomic) comparsion?
3.3 years ago by arshad1292 ▴ 110
0
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1
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1.8k
views
Comment: Comment: Can I use CD-HIT package for shotgun sequencing data (metagenomic) comparsion?
3.4 years ago by arshad1292 ▴ 110
1
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5
replies
1.8k
views
Can I use CD-HIT package for shotgun sequencing data (metagenomic) comparsion?
shotgun CD-HIT metagenome genome
3.3 years ago by arshad1292 ▴ 110
0
votes
1
reply
1.1k
views
Redundancy analysis (RDA) for metagenomic community
bacterial RDA analysis community Redundancy metagenome
updated 3.5 years ago by ▴ 260 • written 3.5 years ago by ▴ 110
0
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6
replies
2.2k
views
ERROR [mem_sam_pe] paired reads have different names -- during binning in metaWRAP pipeline
metawrap
updated 3.5 years ago by 152k • written 3.9 years ago by ▴ 110
0
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0
replies
755
views
neutral community model (NCM) analysis
neutral NCM model community
3.5 years ago by arshad1292 ▴ 110
0
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2
replies
1.3k
views
Comment: Comment: Error in reading tab delimited file
3.6 years ago by arshad1292 ▴ 110
1
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4
replies
1.3k
views
Error in reading tab delimited file
R tab-delimited
updated 3.6 years ago by 21k • written 3.6 years ago by ▴ 110
0
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0
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948
views
Error in (1 - h) * qs[i] : non-numeric argument to binary operator
R moanin time-series
3.6 years ago by arshad1292 ▴ 110
2
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0
replies
979
views
Answer: Answer: Error while running time series analysis in R
3.6 years ago by arshad1292 ▴ 110
2
votes
1
reply
979
views
Error while running time series analysis in R
R moanin time-series
3.6 years ago by arshad1292 ▴ 110
0
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0
replies
2.0k
views
Comment: Comment: help with time series analysis
3.7 years ago by arshad1292 ▴ 110
0
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1
reply
2.0k
views
Comment: Comment: help with time series analysis
3.7 years ago by arshad1292 ▴ 110
0
votes
4
replies
2.0k
views
help with time series analysis
time-series readcount time series RNAseq
3.7 years ago by arshad1292 ▴ 110
0
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0
replies
734
views
RRBS methylation analysis
RRBS analyzer bismark HMST-Seq
3.7 years ago by arshad1292 ▴ 110
1
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2
replies
1.5k
views
how to generate .bed files for methylation (RRBS) analysis
methylation
updated 3.7 years ago by 7.6k • written 3.7 years ago by ▴ 110
0
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0
replies
764
views
Mapping reads and quantifying genes - Metagenomic workshop
metagenome
3.8 years ago by arshad1292 ▴ 110
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