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Comment: Comment: Extract reads from BAM file with known variant
2.3 years ago by pablo ▴ 310
0
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1
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4.8k
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Comment: Comment: Extract reads from BAM file with known variant
2.3 years ago by pablo ▴ 310
0
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0
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4.8k
views
Comment: Comment: Extract reads from BAM file with known variant
2.3 years ago by pablo ▴ 310
0
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0
replies
1.8k
views
Comment: Comment: Find barcodes in fasta file
2.5 years ago by pablo ▴ 310
0
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1
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1.8k
views
Comment: Comment: Find barcodes in fasta file
2.5 years ago by pablo ▴ 310
3
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7
replies
1.8k
views
Find barcodes in fasta file
fasta biopython
2.5 years ago by pablo ▴ 310
0
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1
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1.8k
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Comment: Comment: Find barcodes in fasta file
2.5 years ago by pablo ▴ 310
0
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0
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1.2k
views
Comment: Comment: Method to fill N gaps with de novo assembly
2.5 years ago by pablo ▴ 310
0
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0
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1.2k
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Comment: Comment: Method to fill N gaps with de novo assembly
2.5 years ago by pablo ▴ 310
0
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0
replies
1.2k
views
Comment: Comment: Method to fill N gaps with de novo assembly
2.5 years ago by pablo ▴ 310
0
votes
6
replies
1.2k
views
Method to fill N gaps with de novo assembly
assembly
2.5 years ago by pablo ▴ 310
0
votes
0
replies
403
views
Best practice to find break point in fusion genes
fusiongenes isoseq breakpoint pacbio rnaseq
2.7 years ago by pablo ▴ 310
0
votes
1
reply
952
views
Comment: Comment: Splicing window on fasta sequence
2.9 years ago by pablo ▴ 310
3
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4
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952
views
Splicing window on fasta sequence
biopython python
updated 2.9 years ago by 21k • written 2.9 years ago by ▴ 310
0
votes
1
reply
629
views
Check if a nucleotide matches in CDS (from GenBank)
Genbank
updated 3.0 years ago by 15k • written 3.0 years ago by ▴ 310
0
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0
replies
1.2k
views
Annotation with eggNOG-mapper
prodigal annotation prokaryote eggNOG-mapper
3.0 years ago by pablo ▴ 310
0
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1
reply
1.9k
views
Running RepeatMasker with RepeatModeler database
repeatmasker repeatmodeler
updated 3.1 years ago by 8.9k • written 3.1 years ago by ▴ 310
1
vote
1
reply
2.5k
views
k-mer distribution to estimate the heterozygosity of my assembly
kmer Assembly pacbio purge_dups
updated 3.5 years ago by ▴ 230 • written 4.0 years ago by ▴ 310
0
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0
replies
1.2k
views
Comment: Comment: Blast Output with only one line
3.6 years ago by pablo ▴ 310
1
vote
4
replies
1.2k
views
Blast Output with only one line
blast
3.6 years ago by pablo ▴ 310
0
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2
replies
1.5k
views
Comment: C: Running purge_dups on a hybrid assembly (optical mapping + reads)
3.8 years ago by pablo ▴ 310
0
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1
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1.5k
views
Comment: C: Running purge_dups on a hybrid assembly (optical mapping + reads)
3.8 years ago by pablo ▴ 310
3
votes
5
replies
1.5k
views
Running purge_dups on a hybrid assembly (optical mapping + reads)
pacbio purge_dups Assembly bionano
updated 14 months ago by 7.0k • written 3.8 years ago by ▴ 310
0
votes
1
reply
1.4k
views
Answer: A: De novo alignement with smrttools
3.9 years ago by pablo ▴ 310
1
vote
5
replies
1.4k
views
De novo alignement with smrttools
denovo alignment smrttools
3.9 years ago by pablo ▴ 310
0
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1
reply
1.4k
views
Comment: C: How to determine coverage cutoffs in k-mer distribution
4.0 years ago by pablo ▴ 310
5
votes
3
replies
1.4k
views
How to determine coverage cutoffs in k-mer distribution
kmer distribution kmer Assembly
updated 4.0 years ago by ★ 28k • written 4.0 years ago by ▴ 310
0
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0
replies
1.4k
views
Comment: C: Difference of transcripts between my GFF file and the IGV results
4.0 years ago by pablo ▴ 310
1
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0
replies
1.4k
views
Comment: C: Difference of transcripts between my GFF file and the IGV results
4.0 years ago by pablo ▴ 310
1
vote
9
replies
1.4k
views
Difference of transcripts between my GFF file and the IGV results
gff igv transcripts
4.0 years ago by pablo ▴ 310
0
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1
reply
1.4k
views
Comment: C: Difference of transcripts between my GFF file and the IGV results
4.1 years ago by pablo ▴ 310
0
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1
reply
1.4k
views
Comment: C: Difference of transcripts between my GFF file and the IGV results
4.1 years ago by pablo ▴ 310
0
votes
1
reply
756
views
Transcript sequence aligns twice on the reference
alignement bam
updated 4.1 years ago by 13k • written 4.1 years ago by ▴ 310
0
votes
0
replies
2.2k
views
Comment: C: Problem with vcf format to run gatk FastaAlternateReferenceMaker
4.1 years ago by pablo ▴ 310
0
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3
replies
2.2k
views
Problem with vcf format to run gatk FastaAlternateReferenceMaker
vcf gatk phasing
4.1 years ago by pablo ▴ 310
1
vote
1
reply
1.2k
views
Interpreting results of a dotplot
dotplot dgenies
4.2 years ago by pablo ▴ 310
0
votes
1
reply
4.1k
views
Comment: C: Using HiCanu assembler on PacBio Hifi reads
4.2 years ago by pablo ▴ 310
0
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7
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4.1k
views
Using HiCanu assembler on PacBio Hifi reads
hicanu pacbio ccs
4.2 years ago by pablo ▴ 310
0
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0
replies
4.1k
views
Comment: C: Using HiCanu assembler on PacBio Hifi reads
4.2 years ago by pablo ▴ 310
0
votes
2
replies
948
views
Different number of sequences on the same file between two tools
sequencing counts genometools pacbio bam
updated 4.3 years ago by 20 • written 4.4 years ago by ▴ 310
0
votes
0
replies
1.2k
views
Comment: C: Improving PacBio Assembly with Illumina reads
4.3 years ago by pablo ▴ 310
0
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2
replies
1.2k
views
Improving PacBio Assembly with Illumina reads
Assembly pacbio illumina
4.3 years ago by pablo ▴ 310
0
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0
replies
1.7k
views
Comment: C: Get statistics about an alignment done by Hifiasm
4.3 years ago by pablo ▴ 310
0
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3
replies
1.7k
views
Get statistics about an alignment done by Hifiasm
hifiasm alignment
4.3 years ago by pablo ▴ 310
0
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1
reply
3.1k
views
Comment: C: Fastq files with only " ! " score
4.3 years ago by pablo ▴ 310
2
votes
5
replies
3.1k
views
Fastq files with only " ! " score
fastq samtools
updated 4.3 years ago by 147k • written 4.3 years ago by ▴ 310
0
votes
1
reply
1.0k
views
Time to align full-length transcripts against a reference
pacbio RNA-Seq assembly canu hifiasm
updated 4.3 years ago by 7.0k • written 4.4 years ago by ▴ 310
0
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0
replies
1.7k
views
Comment: C: Different barcodes on demultiplexed data
4.3 years ago by pablo ▴ 310
0
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1
reply
1.7k
views
Comment: C: Different barcodes on demultiplexed data
4.3 years ago by pablo ▴ 310
0
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0
replies
1.7k
views
Comment: C: Different barcodes on demultiplexed data
4.3 years ago by pablo ▴ 310
216 results • Page 2 of 5
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