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Has anyone tried "star --readFilesManifest manifest.tsv" and then "featureCounts --byReadGroup" to quickly get gene quantification for multiple sampl…
RNA-Seq STAR featureCounts
4.0 years ago by Xianjun ▴ 310
5
votes
10
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5.2k
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How to generate random genomic sequences that are GC- and length-matched to my input sequences?
sequence GC random background
updated 4.6 years ago by ▴ 30 • written 6.9 years ago by ▴ 310
2
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0
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2.5k
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Job: Research Scientist in Bioinformatics - Brigham and Women's Hospital, Harvard Medical School
Genomics Neuroscience Boston
updated 20 months ago by 44k • written 4.9 years ago by ▴ 310
0
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1
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47k
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Comment: C: Extracting Read Count For Each Gene/Exon From Rna-Seq Bam Files
updated 5.4 years ago by 44k • written 12.2 years ago by ▴ 310
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5.2k
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Comment: C: How to generate random genomic sequences that are GC- and length-matched to my i
6.9 years ago by Xianjun ▴ 310
0
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0
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5.2k
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Comment: C: How to generate random genomic sequences that are GC- and length-matched to my i
6.9 years ago by Xianjun ▴ 310
0
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1
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5.2k
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Comment: C: How to generate random genomic sequences that are GC- and length-matched to my i
6.9 years ago by Xianjun ▴ 310
2
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1
reply
19k
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Answer: A: heatmap.2 reorder branches
7.6 years ago by Xianjun ▴ 310
4
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0
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16k
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Answer: A: Illumina'S Genome Studio Final Report: Forward Or Top Allele?
8.3 years ago by Xianjun ▴ 310
6
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5
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6.1k
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Why Does Cufflinks With Mask (-M) Option Have Lower Fpkm For Mrna Genes?
cufflinks
updated 9.2 years ago by ▴ 170 • written 11.3 years ago by ▴ 310
0
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0
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10k
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Comment: Comment: How to correctly use the color option in R image() function?
updated 2.0 years ago by 44k • written 9.8 years ago by ▴ 310
9
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3
replies
10k
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How to correctly use the color option in R image() function?
R image
updated 2.0 years ago by 44k • written 9.8 years ago by ▴ 310
3
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0
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10k
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Answer: Answer: How to correctly use the color option in R image() function?
updated 2.0 years ago by 44k • written 9.8 years ago by ▴ 310
1
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0
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24k
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Answer: Answer: Bed File With Introns Only
updated 3.7 years ago by 44k • written 9.8 years ago by ▴ 310
3
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0
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4.2k
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Are the rlog or VST values from DESeq2 comparable across genes?
DESeq2
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 310
0
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0
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49k
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Comment: Comment: Why Are There Many Rna-Seq Hits To Intronic Regions?
updated 2.8 years ago by 44k • written 10.0 years ago by ▴ 310
3
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1
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4.3k
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Answer: Answer: How To Generate Random Size Matched Background Regions
updated 3.1 years ago by 44k • written 10.4 years ago by ▴ 310
0
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4
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4.2k
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cufflinks output file isoforms.fpkm_tracking has mixed ENSGxxx and ENSTxxx ID in the tracking_id column
Cufflinks isoforms.fpkm_tracking RNA-Seq
updated 3.2 years ago by 44k • written 10.6 years ago by ▴ 310
0
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0
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4.2k
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Comment: Comment: cufflinks output file isoforms.fpkm_tracking has mixed ENSGxxx and ENSTxxx ID in
updated 3.2 years ago by 44k • written 10.6 years ago by ▴ 310
0
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0
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4.2k
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Comment: C: cufflinks output file isoforms.fpkm_tracking has mixed ENSGxxx and ENSTxxx ID in
10.6 years ago by Xianjun ▴ 310
27
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8
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11k
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7 follow
Any Quick Sort Method For Large Bed File As 20G In Size?
sort bed
updated 13 months ago by ▴ 540 • written 11.9 years ago by ▴ 310
0
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0
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3.6k
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Job: Computational Biologist In Brain Research, Harvard Medical School, Boston, Us
bioinformatician postdoc
updated 23 months ago by 44k • written 11.0 years ago by ▴ 310
0
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0
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6.1k
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Answer: A: Why Does Cufflinks With Mask (-M) Option Have Lower Fpkm For Mrna Genes?
11.2 years ago by Xianjun ▴ 310
0
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0
replies
6.1k
views
Comment: C: Why Does Cufflinks With Mask (-M) Option Have Lower Fpkm For Mrna Genes?
11.3 years ago by Xianjun ▴ 310
0
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0
replies
6.1k
views
Comment: C: Why Does Cufflinks With Mask (-M) Option Have Lower Fpkm For Mrna Genes?
11.3 years ago by Xianjun ▴ 310
0
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0
replies
11k
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Comment: C: Any Quick Sort Method For Large Bed File As 20G In Size?
11.9 years ago by Xianjun ▴ 310
0
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1
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11k
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Comment: C: Any Quick Sort Method For Large Bed File As 20G In Size?
11.9 years ago by Xianjun ▴ 310
1
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0
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47k
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Comment: C: Extracting Read Count For Each Gene/Exon From Rna-Seq Bam Files
12.2 years ago by Xianjun ▴ 310
1
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0
replies
9.9k
views
Answer: A: A Question About The Sam Entry For A Query Aligned To Multiple Places
12.6 years ago by Xianjun ▴ 310
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