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Comment: Comment: pbmm2 alignment of long reads
5 months ago by priya.bmg ▴ 60
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1.3k
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Comment: Comment: pbmm2 alignment of long reads
5 months ago by priya.bmg ▴ 60
4
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9
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1.3k
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pbmm2 alignment of long reads
Long-reads pbmm2 alignment
5 months ago by priya.bmg ▴ 60
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1.3k
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Comment: Comment: pbmm2 alignment of long reads
5 months ago by priya.bmg ▴ 60
0
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0
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1.3k
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Comment: Comment: pbmm2 alignment of long reads
5 months ago by priya.bmg ▴ 60
0
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2
replies
416
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Regions not clear in VCF
whole-exome variant-calling
updated 7 months ago by 44k • written 7 months ago by ▴ 60
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0
replies
888
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Comment: Comment: Confirming called variants
13 months ago by priya.bmg ▴ 60
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1
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888
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Comment: Comment: Confirming called variants
13 months ago by priya.bmg ▴ 60
0
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5
replies
888
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Confirming called variants
GATK gnomAD
updated 13 months ago by ★ 2.3k • written 13 months ago by ▴ 60
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0
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427
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Visualize tfrecords file from Deepvariant
gzipped flow tensor Deepvariant records
19 months ago by priya.bmg ▴ 60
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1
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26k
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Comment: Comment: intersect VCF files
21 months ago by priya.bmg ▴ 60
0
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1
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26k
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Comment: Comment: intersect VCF files
21 months ago by priya.bmg ▴ 60
0
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1
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26k
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Comment: Comment: intersect VCF files
21 months ago by priya.bmg ▴ 60
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0
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734
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Comment: Comment: Sequencing old DNA samples
2.1 years ago by priya.bmg ▴ 60
2
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2
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734
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Sequencing old DNA samples
Sequencing
2.1 years ago by priya.bmg ▴ 60
0
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1
reply
638
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Pandas Data Frame
vcf GATK-SV pandas annotation
updated 2.1 years ago by ▴ 410 • written 2.1 years ago by ▴ 60
0
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1
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941
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Comment: Comment: Coexpression analysis
2.1 years ago by priya.bmg ▴ 60
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1
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941
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Comment: Comment: Coexpression analysis
2.1 years ago by priya.bmg ▴ 60
1
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5
replies
941
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Coexpression analysis
CEMitool R
updated 17 months ago by 44k • written 2.1 years ago by ▴ 60
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0
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3.2k
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Comment: Comment: WGCNA, module trait relationship
2.1 years ago by priya.bmg ▴ 60
0
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0
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916
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Comment: Comment: Loading Traitdata file for WGCNA analysis
2.1 years ago by priya.bmg ▴ 60
0
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1
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916
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Comment: Comment: Loading Traitdata file for WGCNA analysis
2.1 years ago by priya.bmg ▴ 60
1
vote
4
replies
916
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Loading Traitdata file for WGCNA analysis
R WGCNA
updated 20 months ago by 44k • written 2.1 years ago by ▴ 60
0
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0
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427
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Gene prioritization
MAGMA gene-prioritization
updated 17 months ago by 44k • written 2.2 years ago by ▴ 60
2
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4
replies
2.5k
views
PacBio Raw Data File Formats
PacBio
updated 20 months ago by 44k • written 2.3 years ago by ▴ 60
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0
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2.2k
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Comment: Comment: Lockfile command not found
2.3 years ago by priya.bmg ▴ 60
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1
reply
1.1k
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Pacbio workflow
structural pbsv variants
updated 2.3 years ago by ▴ 50 • written 3.0 years ago by ▴ 60
0
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2
replies
704
views
Bacterial contamination in human DNA sample
Long-read-sequencing Bacterial-contamination
updated 7 months ago by 44k • written 2.4 years ago by ▴ 60
0
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0
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502
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Methylation calling -Primrose Package
Methylation CIGAR PacBio
2.4 years ago by priya.bmg ▴ 60
0
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0
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844
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Comment: Comment: Hard filtering variants
2.8 years ago by priya.bmg ▴ 60
1
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2
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844
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Hard filtering variants
whole exome data
2.8 years ago by priya.bmg ▴ 60
0
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1
reply
2.2k
views
Comment: Comment: Lockfile command not found
2.8 years ago by priya.bmg ▴ 60
1
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1
reply
2.2k
views
Comment: Comment: Lockfile command not found
2.8 years ago by priya.bmg ▴ 60
3
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8
replies
2.2k
views
Lockfile command not found
Oslo Lockfile conda concurrency
2.3 years ago by priya.bmg ▴ 60
0
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0
replies
657
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Snakemake workflow-PacBio
Snakemake PacBio
2.9 years ago by priya.bmg ▴ 60
0
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0
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52k
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Comment: Comment: Filtering Vcf File
2.9 years ago by priya.bmg ▴ 60
0
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1
reply
1.1k
views
Filtering of rare variants
filtering Rare variants
updated 3.0 years ago by 164k • written 3.0 years ago by ▴ 60
1
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2
replies
1.2k
views
Shared variants
filtering variants GATK
updated 3.0 years ago by ▴ 480 • written 3.0 years ago by ▴ 60
0
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1
reply
698
views
Post filtering analysis for exome data
shared rare Hard-filtering variants
updated 3.0 years ago by 164k • written 3.0 years ago by ▴ 60
0
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0
replies
537
views
False negatives -Hard filtering
calling Variant GATK Exome Concordance
3.0 years ago by priya.bmg ▴ 60
0
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1
reply
662
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Individual or joint variant call ing
exome Filtering analysis variants
updated 3.1 years ago by ▴ 830 • written 3.1 years ago by ▴ 60
0
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1
reply
634
views
Preprocessing exome sequence
Analysis workflow-Germline GATK Variant
updated 3.2 years ago by 85k • written 3.2 years ago by ▴ 60
0
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0
replies
751
views
Error in merged bam files
picard GATK NGS
3.2 years ago by priya.bmg ▴ 60
0
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1
reply
741
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Mark duplicates the bam files sorted by coordinates
Spark duplicates Mark
updated 3.2 years ago by 4.0k • written 3.2 years ago by ▴ 60
0
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0
replies
2.5k
views
Comment: Comment: Exec format error in unmapped bam file
3.2 years ago by priya.bmg ▴ 60
0
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0
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2.5k
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Comment: Comment: Exec format error in unmapped bam file
3.2 years ago by priya.bmg ▴ 60
0
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0
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2.5k
views
Comment: Comment: Exec format error in unmapped bam file
3.2 years ago by priya.bmg ▴ 60
0
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0
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2.5k
views
Comment: Comment: Exec format error in unmapped bam file
3.2 years ago by priya.bmg ▴ 60
0
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1
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2.5k
views
Comment: Comment: Exec format error in unmapped bam file
3.2 years ago by priya.bmg ▴ 60
0
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9
replies
2.5k
views
Exec format error in unmapped bam file
bam samtools
updated 20 months ago by 44k • written 3.2 years ago by ▴ 60
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