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Comment: C: [Crushing the bureaucracy in bioinformatics] Introducing Skymap-JupyterHub: acce
6.3 years ago by btsui ▴ 300
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Tool: [Crushing the bureaucracy in bioinformatics] Introducing Skymap-JupyterHub: accessing and utilizing reprocessed expression/ allelic read count profil…
SNP RNA-Seq ChIP-Seq
updated 20 months ago by 44k • written 6.5 years ago by ▴ 300
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Comment: C: Text mining in PDFs
6.4 years ago by btsui ▴ 300
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3.6k
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Answer: A: Extract start coordinate from read 1 and end coordinate from read 2 of paired en
updated 6.5 years ago by 16k • written 6.5 years ago by ▴ 300
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Comment: C: Is it correct to pool transcriptomes coming from different experiment for DE ana
6.5 years ago by btsui ▴ 300
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Comment: C: Introducing Skymap: Allelic read counts extracted from 250,000 human sequencing
6.5 years ago by btsui ▴ 300
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Comment: C: Introducing Skymap: Allelic read counts extracted from 250,000 human sequencing
6.5 years ago by btsui ▴ 300
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Comment: C: Copy number differences between groups
6.5 years ago by btsui ▴ 300
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Answer: A: Tool that can split genes into groups with similar expression pattern overtime
6.5 years ago by btsui ▴ 300
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6.4k
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Comment: C: How to normalize count data for PCA in R - something goes wrong
6.5 years ago by btsui ▴ 300
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Answer: A: Allele counting tool for a list of known indels from paired end sequencing data
6.5 years ago by btsui ▴ 300
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Comment: C: TCGA expression data (TPM)
6.5 years ago by btsui ▴ 300
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3.2k
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Comment: C: how to detect mutation from viral RNA-seq data
6.5 years ago by btsui ▴ 300
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1.5k
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Comment: C: Probabilistic PCA on very sparse SNP matrix
6.5 years ago by btsui ▴ 300
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Answer: A: Grail: reflow on AWS vs others (snakemake/cfncluster, etc)
6.5 years ago by btsui ▴ 300
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Comment: C: TACC vs SDSC vs HTCondor
6.5 years ago by btsui ▴ 300
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Comment: C: TACC vs SDSC vs HTCondor
6.5 years ago by btsui ▴ 300
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Blog: Buying computing infrastructure vs adopting the Cloud in Bioinformatics
sequence
updated 2.0 years ago by 44k • written 6.5 years ago by ▴ 300
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Comment: C: How to detect segmental duplications?
6.5 years ago by btsui ▴ 300
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Comment: C: Best technique for CNV and mutation analysis
6.5 years ago by btsui ▴ 300
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Answer: A: How to automatically retrieve genes of preselected enzymes in a pathway map?
6.5 years ago by btsui ▴ 300
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Comment: C: Design in DESeq: Can you combine explicit and implicit batch effect correction i
6.5 years ago by btsui ▴ 300
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Comment: C: Estimating the purity of tumor cells in microarray data
6.5 years ago by btsui ▴ 300
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1.5k
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Answer: A: Mapping metagenome information to amplicon sequences
6.5 years ago by btsui ▴ 300
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Answer: A: Variant Allele Frequency
6.5 years ago by btsui ▴ 300
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Answer: A: GEO search filtering
6.5 years ago by btsui ▴ 300
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Answer: A: Adjusting for confounding variables in RNA-SEQ Differential Expression Analysis
6.5 years ago by btsui ▴ 300
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2.6k
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Comment: A: Programmatically retrieve the length of a gene
6.5 years ago by btsui ▴ 300
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2.1k
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Answer: A: Assembly of wheat genome
6.5 years ago by btsui ▴ 300
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1.0k
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Answer: A: make a new bam file
6.5 years ago by btsui ▴ 300
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Answer: A: GWAS summary file including risk allele, protective allele and disease
6.5 years ago by btsui ▴ 300
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2.6k
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Comment: C: Introducing Skymap: Allelic read counts extracted from 250,000 human sequencing
6.5 years ago by btsui ▴ 300
32 results • Page 1 of 1
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