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0
votes
2
replies
486
views
What do the transcript variant # mean in RefSeq?
refseq
updated 7 months ago by 44k • written 7 months ago by ▴ 820
0
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0
replies
388
views
Comment: Comment: How to convert Haps file to vcf file?
7 months ago by curious ▴ 820
0
votes
5
replies
931
views
Easy way to find out which allele is minor allele from bed file?
plink
updated 7 months ago by 11k • written 7 months ago by ▴ 820
0
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0
replies
931
views
Comment: Comment: Easy way to find out which allele is minor allele from bed file?
7 months ago by curious ▴ 820
0
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1
reply
931
views
Comment: Comment: Easy way to find out which allele is minor allele from bed file?
7 months ago by curious ▴ 820
0
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0
replies
470
views
Comment: Comment: Can't figure out plink --sample-diff
8 months ago by curious ▴ 820
0
votes
2
replies
470
views
Can't figure out plink --sample-diff
plink
8 months ago by curious ▴ 820
0
votes
0
replies
571
views
Comment: Comment: Why do these two variants appear to result in the same amino acid change when an
10 months ago by curious ▴ 820
3
votes
2
replies
571
views
Why do these two variants appear to result in the same amino acid change when annotated by snpeff, but are annotated differently in clinvar
clinvar
10 months ago by curious ▴ 820
1
vote
1
reply
445
views
Is there a way to map Medgen # to OMIM # programmatically?
medgen omim
updated 11 months ago by 164k • written 11 months ago by ▴ 820
0
votes
1
reply
695
views
Where do these snpeff annotation come from?
snpeff
updated 12 months ago by 102k • written 12 months ago by ▴ 820
0
votes
4
replies
1.4k
views
Is there a way to get a list of all homogygous sites for each sample with plink (regardless if they are in a run)
plink
updated 15 months ago by 11k • written 15 months ago by ▴ 820
0
votes
1
reply
1.4k
views
Comment: Comment: Is there a way to get a list of all homogygous sites for each sample with plink
15 months ago by curious ▴ 820
1
vote
1
reply
542
views
bcftools update ID keeping only string after ';'
bcftools
updated 16 months ago by 164k • written 16 months ago by ▴ 820
0
votes
1
reply
857
views
Comment: Comment: Is this a valid allele in a vcf?
16 months ago by curious ▴ 820
0
votes
1
reply
857
views
Comment: Comment: Is this a valid allele in a vcf?
16 months ago by curious ▴ 820
0
votes
5
replies
857
views
Is this a valid allele in a vcf?
vcf
updated 16 months ago by 44k • written 16 months ago by ▴ 820
0
votes
1
reply
911
views
Comment: Comment: Is it possible to interpret HGVS without transcript version number?
16 months ago by curious ▴ 820
0
votes
1
reply
911
views
Comment: Comment: Is it possible to interpret HGVS without transcript version number?
16 months ago by curious ▴ 820
0
votes
0
replies
526
views
Comment: Comment: jannovar download problem
16 months ago by curious ▴ 820
0
votes
6
replies
911
views
Is it possible to interpret HGVS without transcript version number?
hgvs
updated 16 months ago by ★ 1.2k • written 16 months ago by ▴ 820
0
votes
2
replies
526
views
jannovar download problem
jannovar
16 months ago by curious ▴ 820
0
votes
0
replies
680
views
Comment: Comment: Why does this stop gained result in a longer protein than the canonical version
17 months ago by curious ▴ 820
2
votes
2
replies
680
views
Why does this stop gained result in a longer protein than the canonical version
ensembl
updated 17 months ago by 44k • written 17 months ago by ▴ 820
2
votes
2
replies
2.4k
views
Download VCF for dbsnp 156?
dbsnp
updated 17 months ago by 148k • written 17 months ago by ▴ 820
0
votes
1
reply
543
views
Any way to get bcftools to query up to but not including the last site given in a region query
bcftools
updated 18 months ago by 164k • written 18 months ago by ▴ 820
4
votes
3
replies
1.5k
views
What does canonical transcript mean in the context of VEP
vep
updated 18 months ago by 4.5k • written 18 months ago by ▴ 820
0
votes
0
replies
593
views
Comment: Comment: How to check the imputation quality of genotyping files?
19 months ago by curious ▴ 820
0
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0
replies
1.1k
views
Comment: Comment: Low SNP Overlap with Michigan 1KG and TopMed reference panel
19 months ago by curious ▴ 820
0
votes
0
replies
918
views
Comment: Comment: viewing hgvs in genome data viewer
19 months ago by curious ▴ 820
0
votes
1
reply
918
views
Comment: Comment: viewing hgvs in genome data viewer
19 months ago by curious ▴ 820
1
vote
4
replies
918
views
viewing hgvs in genome data viewer
ncbi hgvs clinvar
19 months ago by curious ▴ 820
0
votes
0
replies
382
views
Trying to understand the difference between between these two HGVS
hgvs
22 months ago by curious ▴ 820
2
votes
2
replies
964
views
drop duplicate insertion deletions in VCF at same position while keeping one
bcftools
22 months ago by curious ▴ 820
0
votes
0
replies
964
views
Comment: Comment: drop duplicate insertion deletions in VCF at same position while keeping one
23 months ago by curious ▴ 820
2
votes
1
reply
1.1k
views
In GWAS what is the point of regressing a quantitative phenotype on covariates first and taking the residuals?
gwas
updated 23 months ago by 4.7k • written 23 months ago by ▴ 820
1
vote
1
reply
593
views
calculating the allele frequency of a gene deletion and duplication
cnv
updated 23 months ago by ★ 2.9k • written 23 months ago by ▴ 820
5
votes
11
replies
3.0k
views
fast way to get last position in a large indexed VCF?
bcftools
updated 2.3 years ago by 102k • written 2.3 years ago by ▴ 820
0
votes
1
reply
3.0k
views
Comment: Comment: fast way to get last position in a large indexed VCF?
2.3 years ago by curious ▴ 820
0
votes
1
reply
3.0k
views
Comment: Comment: fast way to get last position in a large indexed VCF?
2.3 years ago by curious ▴ 820
0
votes
0
replies
980
views
Comment: Comment: is it possible to calculate MAF from DS instead of GT when using bcftools +fill-
2.3 years ago by curious ▴ 820
0
votes
0
replies
980
views
Comment: Comment: is it possible to calculate MAF from DS instead of GT when using bcftools +fill-
2.3 years ago by curious ▴ 820
0
votes
3
replies
980
views
is it possible to calculate MAF from DS instead of GT when using bcftools +fill-tags?
bcftools
2.3 years ago by curious ▴ 820
1
vote
0
replies
526
views
Does genomic control have a valid interpretation when there are no genome-wide significant hits
genomic control statistics
2.4 years ago by curious ▴ 820
0
votes
0
replies
473
views
am I understanding scaled CADD scores correct?
cadd
2.6 years ago by curious ▴ 820
2
votes
1
reply
613
views
Using snpsift to filter VCF by sample
snpsift
updated 2.6 years ago by 164k • written 2.6 years ago by ▴ 820
0
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0
replies
481
views
Does larger standardized PRS value always means higher risk?
prs
2.7 years ago by curious ▴ 820
0
votes
0
replies
1.5k
views
Comment: Comment: grep a vcf
2.8 years ago by curious ▴ 820
0
votes
0
replies
675
views
Converting observed heritability to liability scale, how to get standard error?
hertiability greml ldsc
2.9 years ago by curious ▴ 820
0
votes
0
replies
1.3k
views
Comment: Comment: keep samples that carry non-reference allele in list of variants snpeff/snpsift
2.9 years ago by curious ▴ 820
300 results • Page 1 of 6
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