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0
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4
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2.4k
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Is there a way to force a specific order for variants in a PLINK file that have the same chromosome and bp position?
plink vcf
updated 5.0 years ago by 11k • written 5.0 years ago by ▴ 820
1
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1
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1.4k
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Comment: C: How to assign keys and values in a directory by using python
5.0 years ago by curious ▴ 820
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0
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876
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bcftools error when re-annotating the FILTER column of a VCF when multiple ";" delimited FILTER values exist
vcf vcftools bcftools
5.0 years ago by curious ▴ 820
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1
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7.9k
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Comment: C: Why would you need to specify `--keep-allele-order` and `--a2-allele` when writi
5.0 years ago by curious ▴ 820
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1
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7.9k
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Comment: C: Why would you need to specify `--keep-allele-order` and `--a2-allele` when writi
5.0 years ago by curious ▴ 820
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0
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7.9k
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Comment: C: Why would you need to specify `--keep-allele-order` and `--a2-allele` when writi
5.0 years ago by curious ▴ 820
10
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9
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7.9k
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Why would you need to specify `--keep-allele-order` and `--a2-allele` when writing a VCF with PLINK?
plink vcf
updated 3.0 years ago by ★ 9.6k • written 5.0 years ago by ▴ 820
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0
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4.1k
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Comment: C: Are there any GenomeStudio alternatives to process Illumina genotyping array?
5.1 years ago by curious ▴ 820
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0
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1.9k
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Comment: C: bcftools view -Oz -S [sample list] [input vcf] -o [output vcf] incredibly slow f
5.1 years ago by curious ▴ 820
0
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2
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1.9k
views
bcftools view -Oz -S [sample list] [input vcf] -o [output vcf] incredibly slow for vcf with many samples
vcf bcftools
updated 5.1 years ago by 164k • written 5.1 years ago by ▴ 820
0
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0
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9.6k
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Comment: C: theta value and R value in SNP data
5.2 years ago by curious ▴ 820
0
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1
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1.2k
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Comment: C: Question about why Illumina HumanExome SNP arrays appear to detect [A/T] and [C/
5.2 years ago by curious ▴ 820
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3
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1.2k
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Question about why Illumina HumanExome SNP arrays appear to detect [A/T] and [C/G] SNPs by using two different probes.
SNP gwas illumina array
updated 5.2 years ago by 88k • written 5.2 years ago by ▴ 820
0
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2
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1.4k
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How does genenomestudio's genotyping module calculate minor allele frequency (Minor Freq)?
genomestudio maf SNP gwas
updated 5.2 years ago by 20 • written 5.3 years ago by ▴ 820
0
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0
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1.3k
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Comment: C: Are values from the within-family id column of a plink .fam file supposed to uni
5.2 years ago by curious ▴ 820
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2
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1.3k
views
Are values from the within-family id column of a plink .fam file supposed to unique within just the family or within the whole dataset?
plink gwas
5.2 years ago by curious ▴ 820
1
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0
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102k
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Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
5.3 years ago by curious ▴ 820
0
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0
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1.4k
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Comment: C: How does genenomestudio's genotyping module calculate minor allele frequency (Mi
5.3 years ago by curious ▴ 820
0
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0
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9.0k
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Comment: C: Read binary Illumina GTC files (1000 genomes)
5.3 years ago by curious ▴ 820
0
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0
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9.9k
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Comment: C: Genomestudio: The Project Can Not Be Created. No Valid Samples Were Loaded
5.3 years ago by curious ▴ 820
0
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1
reply
4.1k
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Comment: C: Are there any GenomeStudio alternatives to process Illumina genotyping array?
5.3 years ago by curious ▴ 820
0
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0
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3.8k
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Comment: A: Assistance with coxph and standard errors
5.4 years ago by curious ▴ 820
0
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1
reply
2.2k
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Comment: C: variant calling using pseudoaligners
5.4 years ago by curious ▴ 820
0
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0
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1.2k
views
Comment: C: Libre office in ubuntu is changing my gene names to dates
5.4 years ago by curious ▴ 820
0
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1
reply
2.0k
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Comment: C: Question about implementing quality control of TCGA data for survival analysis
5.4 years ago by curious ▴ 820
0
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0
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2.0k
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Comment: C: Question about implementing quality control of TCGA data for survival analysis
5.4 years ago by curious ▴ 820
0
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0
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2.0k
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Comment: C: Question about implementing quality control of TCGA data for survival analysis
5.4 years ago by curious ▴ 820
0
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6
replies
2.0k
views
Question about implementing quality control of TCGA data for survival analysis
survival cox regression tcga
updated 5.4 years ago by ▴ 170 • written 5.4 years ago by ▴ 820
3
votes
0
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5.2k
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Answer: Answer: Bioinformatics Workstation Suggestions
5.5 years ago by curious ▴ 820
0
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0
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1.6k
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Comment: C: how to download pubmed article abstracts for multiple terms using programming?
5.6 years ago by curious ▴ 820
1
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0
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1.1k
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Comment: C: Extract and ADD text information
5.6 years ago by curious ▴ 820
1
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0
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3.8k
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Can two Kaplan-Meier survival curves cross and still have proportional hazards?
cox regression survival
5.6 years ago by curious ▴ 820
2
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0
replies
2.7k
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Answer: A: How to select only protein coding mRNAs from a really long list of ENSG IDS
5.6 years ago by curious ▴ 820
3
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2
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2.7k
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How to select only protein coding mRNAs from a really long list of ENSG IDS
ensg ensembl ids rna
5.6 years ago by curious ▴ 820
1
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2
replies
1.2k
views
How to know if high expression of a gene is really a good independent marker for poor prognosis in cancer?
survival cox regression RNA-Seq tcga
updated 5.6 years ago by ▴ 120 • written 5.6 years ago by ▴ 820
1
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1
reply
944
views
Comment: A: Python code for extracting values from an Excel database?
5.6 years ago by curious ▴ 820
0
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1
reply
41k
views
Comment: C: Survival analysis with gene expression
5.6 years ago by curious ▴ 820
1
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1
reply
41k
views
Comment: A: Survival analysis with gene expression
5.6 years ago by curious ▴ 820
0
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0
replies
969
views
Comment: C: How to load bed graph in a numpy vector
5.6 years ago by curious ▴ 820
0
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1
reply
2.7k
views
Comment: C: Looking for some feedback on my TCGA survival analysis approach. Any glaring fla
5.6 years ago by curious ▴ 820
0
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1
reply
2.7k
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Comment: C: Looking for some feedback on my TCGA survival analysis approach. Any glaring fla
5.7 years ago by curious ▴ 820
0
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1
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2.7k
views
Comment: C: Looking for some feedback on my TCGA survival analysis approach. Any glaring fla
updated 5.7 years ago by 148k • written 5.7 years ago by ▴ 820
1
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8
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2.7k
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Looking for some feedback on my TCGA survival analysis approach. Any glaring flaws?
RNA-Seq tcga the cancer genome atlas survival cox
5.7 years ago by curious ▴ 820
1
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0
replies
11k
views
Comment: C: How to make clusters in heat map using ggplot2?
5.7 years ago by curious ▴ 820
1
vote
0
replies
1.6k
views
Answer: A: compare two columns of two files
5.7 years ago by curious ▴ 820
0
votes
1
reply
102k
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Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
5.7 years ago by curious ▴ 820
1
vote
1
reply
7.6k
views
Comment: A: Folding RNA on python
5.7 years ago by curious ▴ 820
3
votes
1
reply
11k
views
Answer: A: Hardware requirement for RNA-seq
5.8 years ago by curious ▴ 820
1
vote
1
reply
983
views
Answer: A: Grad school help: Transcriptomics and Pathways Analysis
5.8 years ago by curious ▴ 820
0
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0
replies
1.5k
views
Comment: A: How to install MyRAST tool on Linux Mint correctly?
5.8 years ago by curious ▴ 820
300 results • Page 6 of 6
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