Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
2.2k
views
Comment: Comment: Which companies/institutions allow you to use their servers for bioinformatics a
3.1 years ago by kristina.mahan ▴ 170
0
votes
0
replies
2.2k
views
Comment: Comment: Which companies/institutions allow you to use their servers for bioinformatics a
3.1 years ago by kristina.mahan ▴ 170
6
votes
6
replies
2.2k
views
Which companies/institutions allow you to use their servers for bioinformatics analysis?
pacbio isoseq
updated 2.5 years ago by 45k • written 3.1 years ago by ▴ 170
0
votes
1
reply
1.2k
views
How do I get a gtf file to use rnaQUAST
rnaQUAST ensembl gencode gtf gff
updated 3.4 years ago by ▴ 90 • written 4.6 years ago by ▴ 170
1
vote
4
replies
1.4k
views
Do you need a genome or can a transcriptome alone be used to identify biosynthetic pathways? Why sequence and assemble a genome?
de-novo-assembly biosynthetic-pathways plant transcriptomics
updated 20 months ago by 45k • written 3.5 years ago by ▴ 170
0
votes
1
reply
1.4k
views
Comment: Comment: Do you need a genome or can a transcriptome alone be used to identify biosynthet
3.5 years ago by kristina.mahan ▴ 170
0
votes
0
replies
519
views
Can plantiSMASH be used with a transcriptome instead of a genome?
plantiSMASH
updated 20 months ago by 45k • written 3.5 years ago by ▴ 170
1
vote
3
replies
1.5k
views
Genewiz gave me bam files instead of fasta files- can I convert bam to fasta to have a genome assembly?
bam samtools fasta
updated 20 months ago by 45k • written 3.8 years ago by ▴ 170
2
votes
2
replies
1.3k
views
Will this de novo transcriptome assembly be useful in looking at RNAseq differential expression?
de-novo-assembly
updated 20 months ago by 45k • written 3.9 years ago by ▴ 170
1
vote
4
replies
2.3k
views
How do you add gene annotations from a Diamond Blastx tsv file to a csv file with RNAseq differential expression data?
BLASTx RNA-seq diamond
updated 20 months ago by 45k • written 3.9 years ago by ▴ 170
0
votes
0
replies
2.3k
views
Comment: Comment: How do you add gene annotations from a Diamond Blastx tsv file to a csv file wit
3.9 years ago by kristina.mahan ▴ 170
0
votes
1
reply
2.0k
views
Comment: Comment: What Coverage allele-fraction threshold to use?
4.2 years ago by kristina.mahan ▴ 170
0
votes
1
reply
2.0k
views
Comment: Comment: What Coverage allele-fraction threshold to use?
4.2 years ago by kristina.mahan ▴ 170
0
votes
5
replies
2.0k
views
What Coverage allele-fraction threshold to use?
allele-fraction snps
updated 20 months ago by 45k • written 4.2 years ago by ▴ 170
3
votes
2
replies
1.7k
views
How to check for completeness of a mitochondrial or chloroplast genome?
genome-completeness organelles
updated 20 months ago by 45k • written 4.3 years ago by ▴ 170
0
votes
0
replies
1.7k
views
Answer: A: How to check for completeness of a mitochondrial or chloroplast genome?
4.3 years ago by kristina.mahan ▴ 170
0
votes
1
reply
2.1k
views
Convert .sqn file to .gbk
organelle
updated 20 months ago by 45k • written 4.3 years ago by ▴ 170
0
votes
0
replies
1.2k
views
Comment: C: How to obtain organelle genome
4.3 years ago by kristina.mahan ▴ 170
5
votes
9
replies
5.5k
views
Error when trying to run IGV on server
igv
updated 3.9 years ago by ▴ 140 • written 5.8 years ago by ▴ 170
0
votes
0
replies
810
views
Need to fix .sqn genome annotation file prior to uploading to NCBI
sqn NCBI
updated 20 months ago by 45k • written 4.4 years ago by ▴ 170
0
votes
0
replies
1.9k
views
Comment: C: Error with gff file while building snpeff database
4.6 years ago by kristina.mahan ▴ 170
0
votes
1
reply
1.9k
views
Comment: C: Error with gff file while building snpeff database
4.6 years ago by kristina.mahan ▴ 170
0
votes
1
reply
1.9k
views
Comment: C: Error with gff file while building snpeff database
4.6 years ago by kristina.mahan ▴ 170
0
votes
6
replies
1.9k
views
Error with gff file while building snpeff database
gff java snpeff
updated 20 months ago by 45k • written 4.6 years ago by ▴ 170
2
votes
9
replies
3.1k
views
Getting a gff file from NCBI
gff ncbi
updated 4.6 years ago by ▴ 160 • written 4.6 years ago by ▴ 170
0
votes
0
replies
3.1k
views
Comment: C: Getting a gff file from NCBI
4.6 years ago by kristina.mahan ▴ 170
0
votes
2
replies
3.1k
views
Comment: C: Getting a gff file from NCBI
4.6 years ago by kristina.mahan ▴ 170
0
votes
1
reply
3.1k
views
Comment: C: Getting a gff file from NCBI
4.6 years ago by kristina.mahan ▴ 170
1
vote
3
replies
1.4k
views
How to reduce Quast stats being based on "contigs of size > 100000 bp"
quast
updated 20 months ago by 45k • written 4.8 years ago by ▴ 170
0
votes
0
replies
1.5k
views
Comment: C: Blobtools output files
4.7 years ago by kristina.mahan ▴ 170
0
votes
0
replies
3.1k
views
Comment: C: Distinguishing sequencing reads as prokaryotic or eukaryotic without a reference
4.7 years ago by kristina.mahan ▴ 170
0
votes
1
reply
1.5k
views
Comment: A: Blobtools output files
4.7 years ago by kristina.mahan ▴ 170
0
votes
2
replies
1.5k
views
Blobtools output files
blobtools
updated 20 months ago by 45k • written 4.7 years ago by ▴ 170
0
votes
1
reply
1.2k
views
How to use gff file of old annotation to annotate new assembly
chloroplast gff
updated 20 months ago by 45k • written 4.7 years ago by ▴ 170
0
votes
1
reply
1.5k
views
Comment: C: Illumina reads mapped back onto contigs have gaps
updated 4.7 years ago by 15k • written 4.7 years ago by ▴ 170
0
votes
6
replies
1.5k
views
Illumina reads mapped back onto contigs have gaps
illumina
updated 20 months ago by 45k • written 4.7 years ago by ▴ 170
0
votes
1
reply
1.5k
views
Comment: A: Illumina reads mapped back onto contigs have gaps
4.7 years ago by kristina.mahan ▴ 170
0
votes
0
replies
1.5k
views
Comment: C: Illumina reads mapped back onto contigs have gaps
4.7 years ago by kristina.mahan ▴ 170
0
votes
1
reply
1.4k
views
Comment: C: How to reduce Quast stats being based on "contigs of size > 100000 bp"
4.8 years ago by kristina.mahan ▴ 170
3
votes
0
replies
7.4k
views
Answer: A: k-mer finding and counting
4.9 years ago by kristina.mahan ▴ 170
2
votes
1
reply
2.4k
views
How can you determine ploidy of a genome?
ploidy kmer genomescope jellyfish
updated 4.9 years ago by 35k • written 4.9 years ago by ▴ 170
0
votes
1
reply
1.1k
views
BBnorm not outputting txt files when trying to determine ploidy on pb fastq.gz reads
kmer khist bbnorm bbmap ploidy
updated 4.9 years ago by 152k • written 4.9 years ago by ▴ 170
2
votes
0
replies
86k
views
Answer: A: BAM/SAM to FASTA conversion
4.9 years ago by kristina.mahan ▴ 170
1
vote
1
reply
1.2k
views
How to remove circular contigs from assembly.fasta
de-novo-genome-assembly ngs
updated 20 months ago by 45k • written 4.9 years ago by ▴ 170
1
vote
0
replies
1.3k
views
Comment: C: 18S sequence not matching 18S sequence in assembly
4.9 years ago by kristina.mahan ▴ 170
0
votes
0
replies
1.3k
views
Comment: C: 18S sequence not matching 18S sequence in assembly
4.9 years ago by kristina.mahan ▴ 170
0
votes
1
reply
1.3k
views
Comment: C: 18S sequence not matching 18S sequence in assembly
4.9 years ago by kristina.mahan ▴ 170
0
votes
0
replies
1.3k
views
Comment: C: 18S sequence not matching 18S sequence in assembly
4.9 years ago by kristina.mahan ▴ 170
1
vote
1
reply
2.1k
views
How to extract a range of nucleotides from a fasta file
fasta
updated 20 months ago by 45k • written 4.9 years ago by ▴ 170
1
vote
6
replies
1.3k
views
18S sequence not matching 18S sequence in assembly
18S BLAST
updated 20 months ago by 45k • written 4.9 years ago by ▴ 170
89 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6