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Advice regarding small RNA annotation to a newly sequenced genome
annotation smallRNA RNA-Seq R plyranges
4.1 years ago by Konstantinos Yeles ▴ 120
1
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6
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1.2k
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Parallelization in R 2020
R parallel BiocParallel doParallel snowfall
updated 4.6 years ago by 12k • written 4.6 years ago by ▴ 120
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1.2k
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Comment: C: Parallelization in R 2020
4.6 years ago by Konstantinos Yeles ▴ 120
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2
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1.2k
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Comment: C: Parallelization in R 2020
4.6 years ago by Konstantinos Yeles ▴ 120
1
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0
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2.9k
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Answer: A: Best way to find novel non-coding transcripts from stranded RNA-seq data
5.1 years ago by Konstantinos Yeles ▴ 120
4
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12
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1.7k
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Forum: publicly available data
arrayexpress GEO SRA
updated 19 months ago by 44k • written 5.2 years ago by ▴ 120
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1
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1.7k
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Comment: C: publicly available data
5.2 years ago by Konstantinos Yeles ▴ 120
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1
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1.7k
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Comment: C: publicly available data
5.2 years ago by Konstantinos Yeles ▴ 120
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2
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1.7k
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Comment: C: publicly available data
5.2 years ago by Konstantinos Yeles ▴ 120
0
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2
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1.7k
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Comment: C: publicly available data
5.2 years ago by Konstantinos Yeles ▴ 120
1
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1
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11k
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Answer: A: DESeq2 (or EdgeR) Exploratory Analysis with no Replicates
5.3 years ago by Konstantinos Yeles ▴ 120
3
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0
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6.4k
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Answer: A: RIP-Seq data analysis
5.4 years ago by Konstantinos Yeles ▴ 120
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1
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1.4k
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Comment: C: How to transform my TCGA data into this?
5.4 years ago by Konstantinos Yeles ▴ 120
6
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5
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1.3k
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RIP-seq identifing reverse complement reads between smallRNA and targeted mRNA
RIP-seq GenomicRanges R smallRNA
updated 5.7 years ago by ★ 1.3k • written 5.7 years ago by ▴ 120
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0
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1.3k
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Comment: C: RIP-seq identifing reverse complement reads between smallRNA and targeted mRNA
5.7 years ago by Konstantinos Yeles ▴ 120
0
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1
reply
1.3k
views
Comment: C: RIP-seq identifing reverse complement reads between smallRNA and targeted mRNA
5.7 years ago by Konstantinos Yeles ▴ 120
0
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0
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1.3k
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Comment: C: How to convert output from bowtie1 to Genomic ranges
5.9 years ago by Konstantinos Yeles ▴ 120
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1
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1.3k
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Comment: C: How to convert output from bowtie1 to Genomic ranges
5.9 years ago by Konstantinos Yeles ▴ 120
1
vote
4
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1.3k
views
How to convert output from bowtie1 to Genomic ranges
RNA-Seq GenomicRanges bowtie
updated 5.9 years ago by 86k • written 5.9 years ago by ▴ 120
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0
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4.0k
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Comment: C: smallRNA sequencing workflow and Database usage
6.0 years ago by Konstantinos Yeles ▴ 120
7
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8
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2.5k
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Normalization for small non-coding RNA (piRNAs)
normalization DEseq2 edgeR limma
updated 6.1 years ago by ★ 2.7k • written 6.1 years ago by ▴ 120
0
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0
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2.5k
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Comment: C: Normalization for small non-coding RNA (piRNAs)
6.1 years ago by Konstantinos Yeles ▴ 120
0
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1
reply
2.5k
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Comment: C: Normalization for small non-coding RNA (piRNAs)
6.1 years ago by Konstantinos Yeles ▴ 120
0
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0
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2.5k
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Comment: C: Normalization for small non-coding RNA (piRNAs)
6.1 years ago by Konstantinos Yeles ▴ 120
16
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9
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4.0k
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smallRNA sequencing workflow and Database usage
sRNA-Seq piRNA annotation normalization DEseq2
updated 6.2 years ago by ▴ 40 • written 6.2 years ago by ▴ 120
0
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0
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4.0k
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Comment: C: smallRNA sequencing workflow and Database usage
6.2 years ago by Konstantinos Yeles ▴ 120
0
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0
replies
4.0k
views
Comment: C: smallRNA sequencing workflow and Database usage
6.2 years ago by Konstantinos Yeles ▴ 120
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