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Comment: Comment: WGCNA: many over and under-expressed features in modules of a signed network
18 months ago by Sebastian Hesse ▴ 350
3
votes
3
replies
893
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WGCNA: many over and under-expressed features in modules of a signed network
WGCNA
updated 18 months ago by 3.8k • written 18 months ago by ▴ 350
0
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0
replies
1.9k
views
Comment: Comment: LIMMA: where to find the ANOVA?
19 months ago by Sebastian Hesse ▴ 350
5
votes
2
replies
1.9k
views
LIMMA: where to find the ANOVA?
bioconductor LIMMA R
19 months ago by Sebastian Hesse ▴ 350
0
votes
0
replies
538
views
Input data for LIMMA: unnormalised or vsn or other?
limma normalisation
updated 9 months ago by 44k • written 21 months ago by ▴ 350
1
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1
reply
28k
views
Answer: A: Selection Of Background Gene Set In Enrichment Analysis
3.8 years ago by Sebastian Hesse ▴ 350
0
votes
0
replies
800
views
ANOVA and TUKEYs post-test for 3 groups in R
R expression
updated 3.8 years ago by 85k • written 3.8 years ago by ▴ 350
0
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0
replies
877
views
Comment: C: Weights in normalizeCyclicLoess (Limma, R)
4.0 years ago by Sebastian Hesse ▴ 350
2
votes
1
reply
1.7k
views
Correlating metadata with expression based k-means cluster (in R)
R k-means clustering
updated 4.0 years ago by ★ 3.0k • written 4.2 years ago by ▴ 350
0
votes
0
replies
2.1k
views
Answer: A: Data processing order: normalisation or batch effect correction first?
4.0 years ago by Sebastian Hesse ▴ 350
1
vote
2
replies
2.1k
views
Data processing order: normalisation or batch effect correction first?
limma proteome batch-effect R
updated 7 months ago by 44k • written 4.0 years ago by ▴ 350
75
votes
10
replies
143k
views
6 follow
Fold change - a final explanation
RNA-Seq
updated 4.2 years ago by ▴ 10 • written 6.1 years ago by ▴ 350
1
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0
replies
7.6k
views
Answer: A: Top Variable DEGs into a heatmap
4.2 years ago by Sebastian Hesse ▴ 350
0
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0
replies
2.5k
views
Comment: C: Usage of selectLab in PCAtools, R
4.5 years ago by Sebastian Hesse ▴ 350
3
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1
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2.5k
views
Answer: A: Usage of selectLab in PCAtools, R
4.5 years ago by Sebastian Hesse ▴ 350
8
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9
replies
2.5k
views
Usage of selectLab in PCAtools, R
R PCAtools
4.5 years ago by Sebastian Hesse ▴ 350
0
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0
replies
2.5k
views
Comment: C: Usage of selectLab in PCAtools, R
4.5 years ago by Sebastian Hesse ▴ 350
0
votes
2
replies
2.5k
views
Comment: A: Usage of selectLab in PCAtools, R
4.5 years ago by Sebastian Hesse ▴ 350
0
votes
1
reply
877
views
Weights in normalizeCyclicLoess (Limma, R)
R limma normalizeCyclicLoess
4.5 years ago by Sebastian Hesse ▴ 350
4
votes
7
replies
6.2k
views
Selecting the background for GO enrichment analysis (proteomics)
GO enrichment proteomics clusterProfiler
updated 4.6 years ago by • 0 • written 5.6 years ago by ▴ 350
1
vote
2
replies
2.5k
views
Design matrix for voom: with or without batch blocking?
r voom limma proteomics
updated 4.8 years ago by ★ 7.6k • written 5.8 years ago by ▴ 350
1
vote
2
replies
2.4k
views
How to correctly correct for batch effects
r removeBatchEffect LIMMA PVCA
updated 4.9 years ago by 20 • written 5.7 years ago by ▴ 350
3
votes
4
replies
5.7k
views
Using clusterprofiler (or else) top look for enrichment of one specific GO term
r clusterprofiler bioconductor enrichment
updated 5.1 years ago by • 0 • written 5.6 years ago by ▴ 350
0
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0
replies
5.7k
views
Comment: C: Using clusterprofiler (or else) top look for enrichment of one specific GO term
5.6 years ago by Sebastian Hesse ▴ 350
0
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0
replies
9.4k
views
Comment: C: PVCA message: boundary (singular) fit: see ?isSingular
5.6 years ago by Sebastian Hesse ▴ 350
0
votes
4
replies
9.4k
views
PVCA message: boundary (singular) fit: see ?isSingular
pvca r
5.6 years ago by Sebastian Hesse ▴ 350
1
vote
0
replies
1.9k
views
Comment: C: Interpretation of linear modelling quality test
5.7 years ago by Sebastian Hesse ▴ 350
7
votes
5
replies
6.1k
views
removeBatchEffect with or without log2 values
removeBatchEffect limma r
5.7 years ago by Sebastian Hesse ▴ 350
2
votes
0
replies
6.1k
views
Answer: A: removeBatchEffect with or without log2 values
5.7 years ago by Sebastian Hesse ▴ 350
0
votes
1
reply
6.1k
views
Comment: C: removeBatchEffect with or without log2 values
5.7 years ago by Sebastian Hesse ▴ 350
1
vote
0
replies
733
views
Conditions for valid batch effect correction
r batch-effect
updated 7 months ago by 44k • written 5.7 years ago by ▴ 350
5
votes
5
replies
1.9k
views
Interpretation of linear modelling quality test
r statistics proteomics
5.8 years ago by Sebastian Hesse ▴ 350
0
votes
2
replies
3.5k
views
ComBat correction with one batch containing only one sample - keep or remove?
combat sva proteome R
updated 5.8 years ago by 20 • written 6.0 years ago by ▴ 350
0
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0
replies
3.5k
views
Comment: C: ComBat correction with one batch containing only one sample - keep or remove?
5.8 years ago by Sebastian Hesse ▴ 350
3
votes
5
replies
2.9k
views
LIMMA analysis with 2 samples in comparison group
limma r proteomics
5.8 years ago by Sebastian Hesse ▴ 350
1
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1
reply
2.9k
views
Comment: A: LIMMA analysis with 2 samples in comparison group
5.8 years ago by Sebastian Hesse ▴ 350
0
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0
replies
1.4k
views
Comment: C: About BatchQC packages error
6.1 years ago by Sebastian Hesse ▴ 350
0
votes
0
replies
143k
views
Comment: C: Fold change - a final explanation
6.1 years ago by Sebastian Hesse ▴ 350
38 results • Page 1 of 1
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