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0
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905
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Comment: Comment: BBtools specify java temp dir (or other java options)
23 months ago by FGV ▴ 170
0
votes
0
replies
885
views
Comment: Comment: Bowtie2 - Snakemake
23 months ago by FGV ▴ 170
0
votes
3
replies
905
views
BBtools specify java temp dir (or other java options)
bbtools
updated 23 months ago by 152k • written 23 months ago by ▴ 170
2
votes
2
replies
900
views
fasterq-dump downloads two or three files from a single-end run
fasterq-dump
updated 3.2 years ago by 102k • written 3.2 years ago by ▴ 170
0
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1
reply
1.1k
views
Comment: Comment: (WHY?) Corrupted (truncated) fq.gz files when downloaded from safari
3.2 years ago by FGV ▴ 170
0
votes
0
replies
1.9k
views
Answer: Answer: When to merge BAM or SAM files?
updated 3.2 years ago by 45k • written 3.2 years ago by ▴ 170
1
vote
1
reply
2.5k
views
Comment: Comment: How to limit the resources of a snakemake rule?
3.5 years ago by FGV ▴ 170
2
votes
1
reply
2.5k
views
Answer: Answer: How to limit the resources of a snakemake rule?
3.5 years ago by FGV ▴ 170
1
vote
0
replies
681
views
GATK GenotypeGVCFs changes HET to REF_ALT
genotypegvcfs gatk genotyping haplotypecaller joint
3.5 years ago by FGV ▴ 170
8
votes
5
replies
11k
views
GNU parallel command with several multiple arguments
parallel gnu parallel
updated 4.8 years ago by ★ 4.5k • written 4.8 years ago by ▴ 170
0
votes
0
replies
11k
views
Comment: C: GNU parallel command with several multiple arguments
4.8 years ago by FGV ▴ 170
0
votes
1
reply
11k
views
Comment: C: GNU parallel command with several multiple arguments
4.8 years ago by FGV ▴ 170
0
votes
1
reply
1.0k
views
Merge VCF INFO tags
vcf tags info
5.4 years ago by FGV ▴ 170
0
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1
reply
3.0k
views
Comment: A: filter VCF based on info field that has a key but no value
5.4 years ago by FGV ▴ 170
0
votes
0
replies
4.9k
views
Comment: C: Implement Bgzip Into C Program
updated 5.5 years ago by 45k • written 12.7 years ago by ▴ 170
0
votes
2
replies
3.1k
views
Annotate VCF on specific transcripts (ANN field)
vcf snpEff snpSift
updated 6.5 years ago by 166k • written 6.5 years ago by ▴ 170
0
votes
0
replies
956
views
Query UCSC Browser
ucsc api
6.9 years ago by FGV ▴ 170
0
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1
reply
2.3k
views
Answer: A: Paired-end and single-end reads combined during RNAseq - acceptable?
6.9 years ago by FGV ▴ 170
1
vote
0
replies
2.5k
views
Answer: A: Mapping scaffolds to chromosomes
6.9 years ago by FGV ▴ 170
0
votes
0
replies
3.1k
views
Answer: A: How can I make GATK fasta alternate reference maker faster
6.9 years ago by FGV ▴ 170
7
votes
26
replies
11k
views
6 follow
GNU parallel error: Command line too long
gnu parallel
6.9 years ago by FGV ▴ 170
1
vote
1
reply
11k
views
Answer: A: GNU parallel error: Command line too long
6.9 years ago by FGV ▴ 170
0
votes
1
reply
11k
views
Comment: C: GNU parallel error: Command line too long
7.0 years ago by FGV ▴ 170
0
votes
1
reply
11k
views
Comment: C: GNU parallel error: Command line too long
7.0 years ago by FGV ▴ 170
0
votes
1
reply
11k
views
Comment: C: GNU parallel error: Command line too long
7.0 years ago by FGV ▴ 170
0
votes
0
replies
11k
views
Comment: C: GNU parallel error: Command line too long
7.0 years ago by FGV ▴ 170
0
votes
1
reply
11k
views
Comment: C: GNU parallel error: Command line too long
7.0 years ago by FGV ▴ 170
0
votes
1
reply
11k
views
Comment: C: GNU parallel error: Command line too long
7.0 years ago by FGV ▴ 170
0
votes
1
reply
11k
views
Comment: C: GNU parallel error: Command line too long
7.0 years ago by FGV ▴ 170
0
votes
0
replies
11k
views
Comment: C: GNU parallel error: Command line too long
7.0 years ago by FGV ▴ 170
0
votes
0
replies
11k
views
Comment: C: GNU parallel error: Command line too long
7.0 years ago by FGV ▴ 170
0
votes
0
replies
11k
views
Comment: C: GNU parallel error: Command line too long
7.0 years ago by FGV ▴ 170
0
votes
1
reply
11k
views
Comment: C: GNU parallel error: Command line too long
7.0 years ago by FGV ▴ 170
0
votes
13
replies
2.7k
views
Assemble Amplicons from several samples
NGS Assembly next-gen sequencing
updated 8.1 years ago by 35k • written 8.1 years ago by ▴ 170
0
votes
0
replies
2.7k
views
Comment: C: Assemble Genome from several samples
8.1 years ago by FGV ▴ 170
0
votes
1
reply
2.7k
views
Comment: C: Assemble Genome from several samples
8.1 years ago by FGV ▴ 170
0
votes
1
reply
2.7k
views
Comment: C: Assemble Genome from several samples
8.1 years ago by FGV ▴ 170
0
votes
1
reply
2.7k
views
Comment: C: Assemble Genome from several samples
8.1 years ago by FGV ▴ 170
0
votes
2
replies
2.7k
views
Comment: C: Assemble Genome from several samples
8.1 years ago by FGV ▴ 170
3
votes
10
replies
4.9k
views
Implement Bgzip Into C Program
samtools tabix c
updated 11.0 years ago by 20 • written 12.7 years ago by ▴ 170
2
votes
9
replies
8.5k
views
Fit Mixture Of Gamma And Negative Binomial Distributions In R
r
updated 11.0 years ago by • 0 • written 13.1 years ago by ▴ 170
0
votes
1
reply
4.3k
views
Comment: C: Simulate Ngs Mapped Reads
12.3 years ago by FGV ▴ 170
6
votes
5
replies
4.3k
views
Simulate Ngs Mapped Reads
ngs simulation reads
12.3 years ago by FGV ▴ 170
1
vote
1
reply
4.3k
views
Comment: C: Simulate Ngs Mapped Reads
12.3 years ago by FGV ▴ 170
2
votes
0
replies
4.9k
views
Answer: A: Implement Bgzip Into C Program
12.7 years ago by FGV ▴ 170
0
votes
1
reply
4.9k
views
Comment: C: Implement Bgzip Into C Program
12.7 years ago by FGV ▴ 170
0
votes
1
reply
15k
views
Answer: A: How To Fix Fastq File From Sra When Fastq-Dump Split At Wrong Position
12.8 years ago by FGV ▴ 170
0
votes
1
reply
3.6k
views
Comment: C: Samtools Vcf Reference And Alternate Alleles
12.9 years ago by FGV ▴ 170
2
votes
3
replies
3.6k
views
Samtools Vcf Reference And Alternate Alleles
samtools vcf
updated 12.9 years ago by 15k • written 12.9 years ago by ▴ 170
2
votes
0
replies
8.2k
views
Answer: A: Filtering Out Reads Based On Base Quality With Samtools Seems Not To Work Proper
13.1 years ago by FGV ▴ 170
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