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564
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Comment: Comment: Enrichment analyses (GO TERM etc)
3 months ago by kl ▴ 20
3
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4
replies
564
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Enrichment analyses (GO TERM etc)
clusteprofiler somascan proteins enrichment
updated 3 months ago by ★ 2.0k • written 3 months ago by ▴ 20
2
votes
1
reply
516
views
ENRICHMENT USING CLUSTERPROFILER
clusterprofiler SOMASCAN proteins enrichment
updated 5 months ago by 88k • written 5 months ago by ▴ 20
0
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0
replies
365
views
Imputed data doesn't match directly genotyped APOE genotype
APOE directgenotyping imputation
12 months ago by kl ▴ 20
0
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0
replies
407
views
Can you use a polygenic risk score for a trait (e.g., BMI) in association analyses when it doesn't associate with BMI in the sample it is used?
polygenic-risk-score imputation
updated 12 months ago by 45k • written 12 months ago by ▴ 20
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0
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1.4k
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Comment: Comment: Annotating file using bcftools
13 months ago by kl ▴ 20
0
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0
replies
1.4k
views
Comment: Comment: Annotating file using bcftools
updated 13 months ago by 166k • written 13 months ago by ▴ 20
0
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1
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1.4k
views
Comment: Comment: Annotating file using bcftools
13 months ago by kl ▴ 20
1
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5
replies
1.4k
views
Annotating file using bcftools
annotation plink bcftools
13 months ago by kl ▴ 20
0
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1
reply
1.9k
views
Comment: Comment: Post-imputation plot
13 months ago by kl ▴ 20
0
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7
replies
1.9k
views
Post-imputation plot
michigan-imputation-server quality-control
updated 13 months ago by 5.0k • written 13 months ago by ▴ 20
0
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0
replies
1.9k
views
Comment: Comment: Post-imputation plot
updated 13 months ago by 152k • written 13 months ago by ▴ 20
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1
reply
1.9k
views
Comment: Comment: Post-imputation plot
13 months ago by kl ▴ 20
0
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0
replies
316
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Imputation advice
imputation
14 months ago by kl ▴ 20
0
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0
replies
385
views
Heterozygous haploid calls
plink genetics
17 months ago by kl ▴ 20
0
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0
replies
678
views
Comment: Comment: How to perform quality control for sex when there are no variants after threshol
18 months ago by kl ▴ 20
0
votes
2
replies
678
views
How to perform quality control for sex when there are no variants after thresholding for MAF
sex-check
updated 18 months ago by 45k • written 18 months ago by ▴ 20
0
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1
reply
1.2k
views
Comment: Comment: Genetic data QC prior to imputation
18 months ago by kl ▴ 20
0
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1
reply
689
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Issue with genetic QC sex check
plink
18 months ago by kl ▴ 20
0
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0
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689
views
Comment: Comment: Issue with genetic QC sex check
18 months ago by kl ▴ 20
0
votes
0
replies
535
views
Negative F statistics for sex check in plink
plink check sex
18 months ago by kl ▴ 20
1
vote
3
replies
1.2k
views
Genetic data QC prior to imputation
imputation
updated 18 months ago by ★ 1.5k • written 19 months ago by ▴ 20
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0
replies
1.5k
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Comment: Comment: SNP IDs
19 months ago by kl ▴ 20
0
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1
reply
1.5k
views
Comment: Comment: SNP IDs
19 months ago by kl ▴ 20
0
votes
1
reply
1.5k
views
Comment: Comment: SNP IDs
19 months ago by kl ▴ 20
4
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7
replies
1.5k
views
SNP IDs
SNP
19 months ago by kl ▴ 20
0
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1
reply
1.2k
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Comment: Comment: QC of genetic data
20 months ago by kl ▴ 20
0
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3
replies
1.2k
views
QC of genetic data
PLINK
updated 20 months ago by ★ 3.1k • written 20 months ago by ▴ 20
0
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1
reply
1.2k
views
Repeated measures in GWAS and polygenic risk scores analyses
SNP
updated 19 months ago by 12k • written 5.2 years ago by ▴ 20
0
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1
reply
3.1k
views
Comment: C: How to perform GWAS using BOLT-LMM iteratively for many phenotypes in bash
4.7 years ago by kl ▴ 20
1
vote
1
reply
1.3k
views
How to incorporate interaction between two alleles in ApoE for Alzheimer's polygenic risk score?
SNP
updated 4.7 years ago by 20 • written 6.5 years ago by ▴ 20
0
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1
reply
3.1k
views
Comment: C: How to perform GWAS using BOLT-LMM iteratively for many phenotypes in bash
4.8 years ago by kl ▴ 20
0
votes
1
reply
3.1k
views
Comment: Comment: How to perform GWAS using BOLT-LMM iteratively for many phenotypes in bash
updated 19 months ago by 12k • written 4.8 years ago by ▴ 20
0
votes
7
replies
3.1k
views
How to perform GWAS using BOLT-LMM iteratively for many phenotypes in bash
gene genome
updated 19 months ago by 12k • written 4.8 years ago by ▴ 20
0
votes
0
replies
1.0k
views
Match:0 michigan imputation server output
michigan imputation server
updated 4.9 years ago by 6.4k • written 4.9 years ago by ▴ 20
0
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1
reply
1.6k
views
Comment: C: How can you update vcf when one of the columns is CHR:POS:REF:ALT using bcftools
4.9 years ago by kl ▴ 20
1
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3
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1.6k
views
How can you update vcf when one of the columns is CHR:POS:REF:ALT using bcftools?
bcftools
4.9 years ago by kl ▴ 20
0
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1
reply
3.8k
views
Comment: C: Post-imputation steps (cleaning and converting to plink)
updated 4.9 years ago by 89k • written 4.9 years ago by ▴ 20
0
votes
1
reply
11k
views
Comment: C: michigan imputation server
updated 4.9 years ago by 152k • written 4.9 years ago by ▴ 20
0
votes
11
replies
3.8k
views
Post-imputation steps (cleaning and converting to plink)
SNP MICHIGAN IMPUTATION SERVER
4.9 years ago by kl ▴ 20
0
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1
reply
3.8k
views
Comment: A: Post-imputation steps (cleaning and converting to plink)
4.9 years ago by kl ▴ 20
0
votes
2
replies
3.8k
views
Comment: C: Post-imputation steps (cleaning and converting to plink)
updated 4.9 years ago by 45k • written 4.9 years ago by ▴ 20
0
votes
0
replies
3.8k
views
Comment: A: Post-imputation steps (cleaning and converting to plink)
updated 4.9 years ago by 152k • written 4.9 years ago by ▴ 20
0
votes
0
replies
3.8k
views
Comment: A: Post-imputation steps (cleaning and converting to plink)
4.9 years ago by kl ▴ 20
0
votes
0
replies
773
views
Sequence of steps in quality control of genetic data
quality control imputation plink genome
updated 5.0 years ago by 152k • written 5.0 years ago by ▴ 20
0
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1
reply
1.4k
views
Can I convert a beta to a standardised beta, only knowing the standard error of the beta without individual-level data?
SNP
5.3 years ago by kl ▴ 20
1
vote
1
reply
1.5k
views
Do you always need to clump polygenic risk scores?
snp
updated 5.3 years ago by ★ 4.8k • written 5.3 years ago by ▴ 20
0
votes
0
replies
2.0k
views
Linkage disequilibrium clumping in plink
LD clumping plink
6.3 years ago by kl ▴ 20
0
votes
1
reply
1.3k
views
Check whether two GWAS are from the same ancestry
allele frequency
updated 6.3 years ago by 89k • written 6.3 years ago by ▴ 20
1
vote
2
replies
1.6k
views
PLINK meta-analysis when there is SNP for just one study
PLINK
updated 6.4 years ago by 12k • written 6.4 years ago by ▴ 20
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