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Comment: Comment: Annotating file using bcftools
19 hours ago by kl ▴ 10
0
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0
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256
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Comment: Comment: Annotating file using bcftools
updated 1 day ago by 161k • written 1 day ago by ▴ 10
0
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1
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256
views
Comment: Comment: Annotating file using bcftools
1 day ago by kl ▴ 10
1
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5
replies
256
views
Annotating file using bcftools
annotation plink bcftools
19 hours ago by kl ▴ 10
0
votes
1
reply
633
views
Comment: Comment: Post-imputation plot
15 days ago by kl ▴ 10
0
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7
replies
633
views
Post-imputation plot
michigan-imputation-server quality-control
updated 14 days ago by 3.9k • written 17 days ago by ▴ 10
0
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0
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633
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Comment: Comment: Post-imputation plot
updated 15 days ago by 142k • written 15 days ago by ▴ 10
0
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1
reply
633
views
Comment: Comment: Post-imputation plot
16 days ago by kl ▴ 10
0
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0
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96
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Imputation advice
imputation
25 days ago by kl ▴ 10
0
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0
replies
156
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Heterozygous haploid calls
plink genetics
4 months ago by kl ▴ 10
0
votes
0
replies
360
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Comment: Comment: How to perform quality control for sex when there are no variants after threshol
5 months ago by kl ▴ 10
0
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2
replies
360
views
How to perform quality control for sex when there are no variants after thresholding for MAF
sex-check
updated 5 months ago by 43k • written 5 months ago by ▴ 10
0
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1
reply
610
views
Comment: Comment: Genetic data QC prior to imputation
5 months ago by kl ▴ 10
0
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1
reply
380
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Issue with genetic QC sex check
plink
5 months ago by kl ▴ 10
0
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0
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380
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Comment: Comment: Issue with genetic QC sex check
5 months ago by kl ▴ 10
0
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0
replies
287
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Negative F statistics for sex check in plink
plink check sex
5 months ago by kl ▴ 10
1
vote
3
replies
610
views
Genetic data QC prior to imputation
imputation
updated 5 months ago by ★ 1.4k • written 5 months ago by ▴ 10
0
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0
replies
843
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Comment: Comment: SNP IDs
6 months ago by kl ▴ 10
0
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1
reply
843
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Comment: Comment: SNP IDs
6 months ago by kl ▴ 10
0
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1
reply
843
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Comment: Comment: SNP IDs
6 months ago by kl ▴ 10
4
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7
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843
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SNP IDs
SNP
6 months ago by kl ▴ 10
0
votes
1
reply
667
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Comment: Comment: QC of genetic data
7 months ago by kl ▴ 10
0
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3
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667
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QC of genetic data
PLINK
updated 7 months ago by ★ 2.5k • written 7 months ago by ▴ 10
0
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1
reply
930
views
Repeated measures in GWAS and polygenic risk scores analyses
SNP
updated 6 months ago by 11k • written 4.1 years ago by ▴ 10
0
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1
reply
2.5k
views
Comment: C: How to perform GWAS using BOLT-LMM iteratively for many phenotypes in bash
3.7 years ago by kl ▴ 10
1
vote
1
reply
1.1k
views
How to incorporate interaction between two alleles in ApoE for Alzheimer's polygenic risk score?
SNP
updated 3.7 years ago by 20 • written 5.4 years ago by ▴ 10
0
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1
reply
2.5k
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Comment: C: How to perform GWAS using BOLT-LMM iteratively for many phenotypes in bash
3.7 years ago by kl ▴ 10
0
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1
reply
2.5k
views
Comment: Comment: How to perform GWAS using BOLT-LMM iteratively for many phenotypes in bash
updated 6 months ago by 11k • written 3.7 years ago by ▴ 10
0
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7
replies
2.5k
views
How to perform GWAS using BOLT-LMM iteratively for many phenotypes in bash
gene genome
updated 6 months ago by 11k • written 3.7 years ago by ▴ 10
0
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0
replies
830
views
Match:0 michigan imputation server output
michigan imputation server
updated 3.8 years ago by 5.3k • written 3.8 years ago by ▴ 10
0
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1
reply
1.2k
views
Comment: C: How can you update vcf when one of the columns is CHR:POS:REF:ALT using bcftools
3.8 years ago by kl ▴ 10
1
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3
replies
1.2k
views
How can you update vcf when one of the columns is CHR:POS:REF:ALT using bcftools?
bcftools
3.8 years ago by kl ▴ 10
0
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1
reply
2.9k
views
Comment: C: Post-imputation steps (cleaning and converting to plink)
updated 3.8 years ago by 88k • written 3.8 years ago by ▴ 10
0
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1
reply
9.5k
views
Comment: C: michigan imputation server
updated 3.8 years ago by 142k • written 3.8 years ago by ▴ 10
0
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11
replies
2.9k
views
Post-imputation steps (cleaning and converting to plink)
SNP MICHIGAN IMPUTATION SERVER
3.8 years ago by kl ▴ 10
0
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1
reply
2.9k
views
Comment: A: Post-imputation steps (cleaning and converting to plink)
3.8 years ago by kl ▴ 10
0
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2
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2.9k
views
Comment: C: Post-imputation steps (cleaning and converting to plink)
updated 3.8 years ago by 43k • written 3.8 years ago by ▴ 10
0
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0
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2.9k
views
Comment: A: Post-imputation steps (cleaning and converting to plink)
updated 3.8 years ago by 142k • written 3.8 years ago by ▴ 10
0
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0
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2.9k
views
Comment: A: Post-imputation steps (cleaning and converting to plink)
3.8 years ago by kl ▴ 10
0
votes
0
replies
609
views
Sequence of steps in quality control of genetic data
quality control imputation plink genome
updated 3.9 years ago by 142k • written 3.9 years ago by ▴ 10
0
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1
reply
1.1k
views
Can I convert a beta to a standardised beta, only knowing the standard error of the beta without individual-level data?
SNP
4.2 years ago by kl ▴ 10
1
vote
1
reply
1.2k
views
Do you always need to clump polygenic risk scores?
snp
updated 4.2 years ago by ★ 4.7k • written 4.3 years ago by ▴ 10
0
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0
replies
1.8k
views
Linkage disequilibrium clumping in plink
LD clumping plink
5.2 years ago by kl ▴ 10
0
votes
1
reply
1.1k
views
Check whether two GWAS are from the same ancestry
allele frequency
updated 5.3 years ago by 88k • written 5.3 years ago by ▴ 10
1
vote
2
replies
1.4k
views
PLINK meta-analysis when there is SNP for just one study
PLINK
updated 5.3 years ago by 11k • written 5.3 years ago by ▴ 10
0
votes
0
replies
1.5k
views
BOLT LMM - invalid heritability estimate error
SNP genome
5.4 years ago by kl ▴ 10
8
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6
replies
2.4k
views
How to convert a meta-analysis file from PLINK (.meta) to a .csv or.txt to be read into R?
PLINK R
updated 5.4 years ago by 11k • written 5.4 years ago by ▴ 10
0
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1
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2.4k
views
Comment: C: How to convert a meta-analysis file from PLINK (.meta) to a .csv or.txt to be re
updated 5.4 years ago by 47k • written 5.4 years ago by ▴ 10
0
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0
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4.2k
views
Comment: C: Meta-analysis in PLINK - What to use in order to do a forest plot
5.4 years ago by kl ▴ 10
0
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1
reply
4.2k
views
Comment: C: Meta-analysis in PLINK - What to use in order to do a forest plot
5.4 years ago by kl ▴ 10
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