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Linear Mixed-effects Modelling for Mouse Tumor Growth Data
lmerTest modelling mixed-effects lme4
6 months ago by BioNovice247 ▴ 20
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924
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Comment: Comment: DESeq2_ How to Account for the Expression Levels of a Specific Gene?
10 months ago by BioNovice247 ▴ 20
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5
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924
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DESeq2_ How to Account for the Expression Levels of a Specific Gene?
Differential-Expression-Analysis DESeq2
updated 10 months ago by ★ 18k • written 10 months ago by ▴ 20
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Comment: Comment: Linear Mixed-Effects Model Coefficient Interpretation
14 months ago by BioNovice247 ▴ 20
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2
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1.1k
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Linear Mixed-Effects Model Coefficient Interpretation
LMER mixed-effects R modeling
14 months ago by BioNovice247 ▴ 20
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1
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2.1k
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How should the the correlation of module eigengenes with categorical external traits be assessed in WGCNA?
RNA-seq Correlation WGCNA
updated 2.9 years ago by ▴ 80 • written 2.9 years ago by ▴ 20
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814
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When do we consider TCGA mRNA and miRNA data as matched samples?
TCGA GDC RNA-seq mRNA miRNA
updated 3.2 years ago by ★ 1.3k • written 3.4 years ago by ▴ 20
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How to prepare the data prior to Quantile Normalization for comparisons across studies/platforms ?
microarray normalization RNA-seq Quantile-normalization quantile
3.4 years ago by BioNovice247 ▴ 20
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1.0k
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Comment: Comment: Normalization of RNA-seq data across tumors. Should I pool the samples?
3.4 years ago by BioNovice247 ▴ 20
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1.0k
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Normalization of RNA-seq data across tumors. Should I pool the samples?
DESeq2 TCGA RNA-seq VST Normalization
3.4 years ago by BioNovice247 ▴ 20
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59k
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Comment: Comment: PCA plot from read count matrix from RNA-Seq
3.4 years ago by BioNovice247 ▴ 20
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2.2k
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Comment: Comment: What is the most appropriate method for correlation analysis of mRNA-target corr
3.5 years ago by BioNovice247 ▴ 20
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2.2k
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Comment: Comment: What is the most appropriate method for correlation analysis of mRNA-target corr
3.5 years ago by BioNovice247 ▴ 20
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4
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2.2k
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What is the most appropriate method for correlation analysis of mRNA-target correlations? And why?
data pearson spearman expression correlation kendall
3.5 years ago by BioNovice247 ▴ 20
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Comment: Comment: How to normalize Kallisto count matrix collapsed at gene-level with TMM/DESeq2?
3.5 years ago by BioNovice247 ▴ 20
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2.1k
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Comment: Comment: How to normalize Kallisto count matrix collapsed at gene-level with TMM/DESeq2?
3.5 years ago by BioNovice247 ▴ 20
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4
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2.1k
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How to normalize Kallisto count matrix collapsed at gene-level with TMM/DESeq2?
DESeq2 TMM Kallisto edgeR
3.5 years ago by BioNovice247 ▴ 20
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