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3
votes
5
replies
6.7k
views
Creating assembly graphs .gfa
assembly gfa graph bandage visualization
updated 10 months ago by ▴ 40 • written 4.9 years ago by ▴ 80
0
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0
replies
4.7k
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Comment: C: how to get database of plants in FASTA format from uniprot
3.8 years ago by ricardoguerreiro2121 ▴ 80
0
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0
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2.8k
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Comment: C: Mapping (minimap2) nanopore reads to parent species to confirm hybridization
3.9 years ago by ricardoguerreiro2121 ▴ 80
0
votes
0
replies
7.6k
views
Comment: C: MAKER annotation post processing (AED score)
4.2 years ago by ricardoguerreiro2121 ▴ 80
0
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0
replies
8.0k
views
Answer: A: Principle Component Analysis (PCA) for GWAS (SNP genotype data)
4.2 years ago by ricardoguerreiro2121 ▴ 80
1
vote
2
replies
2.8k
views
Mapping (minimap2) nanopore reads to parent species to confirm hybridization
hybrids long reads parents minimap2
4.6 years ago by ricardoguerreiro2121 ▴ 80
0
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0
replies
1.8k
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Comment: C: Multiple mapping with longreads - Get primary mapping
4.7 years ago by ricardoguerreiro2121 ▴ 80
1
vote
2
replies
1.8k
views
Multiple mapping with longreads - Get primary mapping
mapping minimap2 long reads pacbio samtools
updated 4.7 years ago by 47k • written 4.7 years ago by ▴ 80
0
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0
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6.7k
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Comment: C: Creating assembly graphs .gfa
4.7 years ago by ricardoguerreiro2121 ▴ 80
0
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0
replies
59k
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Comment: C: What are chimeric reads?
4.8 years ago by ricardoguerreiro2121 ▴ 80
0
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0
replies
5.3k
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Comment: C: Reference-guided assembly from short reads
4.8 years ago by ricardoguerreiro2121 ▴ 80
0
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1
reply
5.0k
views
Comment: C: Trimming out primer sequences in the middle of reads
4.9 years ago by ricardoguerreiro2121 ▴ 80
3
votes
2
replies
1.2k
views
Extracting homologous proteins from genome ( blat or exonerate)
blat genome proteins phylogeny exonerate
4.9 years ago by ricardoguerreiro2121 ▴ 80
0
votes
0
replies
1.2k
views
Answer: A: Extracting homologous proteins from genome ( blat or exonerate)
4.9 years ago by ricardoguerreiro2121 ▴ 80
3
votes
1
reply
1.0k
views
Is Genome heterozygosity a problem for gene annotation?
heterozygosity diploid genome gene annotation
updated 4.9 years ago by 15k • written 4.9 years ago by ▴ 80
0
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1
reply
7.8k
views
Comment: C: gene set filter/selection for training ab initio annotation tools
4.9 years ago by ricardoguerreiro2121 ▴ 80
2
votes
0
replies
7.8k
views
Comment: C: gene set filter/selection for training ab initio annotation tools
4.9 years ago by ricardoguerreiro2121 ▴ 80
0
votes
1
reply
11k
views
Comment: C: Create de novo repeat library
5.0 years ago by ricardoguerreiro2121 ▴ 80
1
vote
1
reply
4.7k
views
Answer: A: how to get database of plants in FASTA format from uniprot
5.1 years ago by ricardoguerreiro2121 ▴ 80
1
vote
1
reply
1.5k
views
HMMER esl-fetch corrupt coords
HHMER ESL
5.2 years ago by ricardoguerreiro2121 ▴ 80
0
votes
0
replies
2.7k
views
Answer: A: Alternatives to RepeatModeler / nseg install fail
5.3 years ago by ricardoguerreiro2121 ▴ 80
1
vote
1
reply
2.4k
views
Maker (Gene annotation) RepeatMasker error
maker gene annotation repeatmasker
5.3 years ago by ricardoguerreiro2121 ▴ 80
0
votes
0
replies
2.7k
views
Answer: A: pacbio-illumina hybrid assemblies
5.4 years ago by ricardoguerreiro2121 ▴ 80
5
votes
9
replies
2.8k
views
Parse raw vcf in R from CollapsedVCF (VariantAnnotation library)
VariantAnnotation bioconductor vcf
5.8 years ago by ricardoguerreiro2121 ▴ 80
0
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0
replies
2.8k
views
Comment: C: Parse raw vcf in R from CollapsedVCF (VariantAnnotation library)
5.8 years ago by ricardoguerreiro2121 ▴ 80
0
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0
replies
2.8k
views
Comment: C: Parse raw vcf in R from CollapsedVCF (VariantAnnotation library)
5.8 years ago by ricardoguerreiro2121 ▴ 80
0
votes
1
reply
2.8k
views
Comment: C: Parse raw vcf in R from CollapsedVCF (VariantAnnotation library)
5.8 years ago by ricardoguerreiro2121 ▴ 80
0
votes
1
reply
2.8k
views
Comment: C: Parse raw vcf in R from CollapsedVCF (VariantAnnotation library)
5.8 years ago by ricardoguerreiro2121 ▴ 80
0
votes
1
reply
1.9k
views
Comment: C: Sequence identity between sequences with different lengths
5.8 years ago by ricardoguerreiro2121 ▴ 80
6
votes
5
replies
1.9k
views
Sequence identity between sequences with different lengths
sequence identity alignment filter mummer
updated 5.8 years ago by 5.9k • written 5.8 years ago by ▴ 80
0
votes
0
replies
3.6k
views
Comment: C: Pysam VariantFile.fetch() without specifying contig
5.9 years ago by ricardoguerreiro2121 ▴ 80
4
votes
2
replies
3.6k
views
Pysam VariantFile.fetch() without specifying contig
pysam python vcf
5.9 years ago by ricardoguerreiro2121 ▴ 80
0
votes
0
replies
12k
views
Comment: C: Capping coverage in bam file
6.1 years ago by ricardoguerreiro2121 ▴ 80
0
votes
1
reply
12k
views
Comment: C: Capping coverage in bam file
6.1 years ago by ricardoguerreiro2121 ▴ 80
0
votes
1
reply
12k
views
Comment: C: Capping coverage in bam file
6.1 years ago by ricardoguerreiro2121 ▴ 80
35 results • Page 1 of 1
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