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4
votes
12
replies
8.8k
views
Extract fasta sequence from gff3 file
sequence
updated 16 months ago by ▴ 10 • written 4.1 years ago by ▴ 10
1
vote
2
replies
766
views
Combine files that have partial filename matches
Sequence
updated 2.3 years ago by 166k • written 2.3 years ago by ▴ 10
0
votes
0
replies
809
views
Comment: Comment: Split file into multiple individual files based on specific attributes
2.3 years ago by genomes_and_MGEs ▴ 10
1
vote
3
replies
809
views
Split file into multiple individual files based on specific attributes
Sequence
2.3 years ago by genomes_and_MGEs ▴ 10
0
votes
1
reply
978
views
Comment: Comment: Parsing genbank or gff files based on specific nucleotide coordinates
2.5 years ago by genomes_and_MGEs ▴ 10
1
vote
3
replies
978
views
Parsing genbank or gff files based on specific nucleotide coordinates
Sequence
updated 2.5 years ago by 22k • written 2.5 years ago by ▴ 10
3
votes
1
reply
553
views
Separate letters in the same column into different rows
sequence
updated 2.8 years ago by 166k • written 2.8 years ago by ▴ 10
3
votes
3
replies
1.5k
views
Extract first and last column of fasta-header
sequence
updated 2.8 years ago by ▴ 380 • written 2.8 years ago by ▴ 10
3
votes
3
replies
1.1k
views
Count values based on condition
sequence
updated 2.9 years ago by 14k • written 2.9 years ago by ▴ 10
2
votes
2
replies
715
views
Add new column with filename
sequence
updated 2.9 years ago by 21k • written 2.9 years ago by ▴ 10
1
vote
2
replies
704
views
Rename filenames based on list
sequence
updated 3.0 years ago by 5.1k • written 3.0 years ago by ▴ 10
0
votes
1
reply
986
views
Comment: Comment: Append assembly accession to nucleotide accession number in RefSeq Genbank file
3.1 years ago by genomes_and_MGEs ▴ 10
0
votes
3
replies
986
views
Append assembly accession to nucleotide accession number in RefSeq Genbank file
sequence
updated 3.1 years ago by 21k • written 3.1 years ago by ▴ 10
0
votes
0
replies
580
views
Comment: Comment: Filter numeric matrix only show large network clusters in Cytoscape
3.1 years ago by genomes_and_MGEs ▴ 10
0
votes
1
reply
580
views
Filter numeric matrix only show large network clusters in Cytoscape
sequence
3.1 years ago by genomes_and_MGEs ▴ 10
0
votes
1
reply
724
views
Comment: Comment: Sequence length of fasta sequences with special characters removed
3.1 years ago by genomes_and_MGEs ▴ 10
3
votes
3
replies
724
views
Sequence length of fasta sequences with special characters removed
sequence
updated 3.1 years ago by 21k • written 3.1 years ago by ▴ 10
3
votes
3
replies
1.7k
views
Count number of basepairs and exclude other characters
sequence
updated 3.5 years ago by 89k • written 3.5 years ago by ▴ 10
1
vote
1
reply
847
views
Split multi-fasta file and keep structure
sequence
updated 3.6 years ago by 21k • written 3.6 years ago by ▴ 10
0
votes
1
reply
1.8k
views
Comment: Comment: Remove whitespaces on fasta files, except on fasta-header
3.7 years ago by genomes_and_MGEs ▴ 10
1
vote
3
replies
1.8k
views
Remove whitespaces on fasta files, except on fasta-header
sequence
updated 3.7 years ago by 21k • written 3.7 years ago by ▴ 10
1
vote
10
replies
2.3k
views
Extract NCBI's refseq assembly accession number from nuccore IDs
sequence
updated 3.9 years ago by 45k • written 3.9 years ago by ▴ 10
0
votes
0
replies
2.3k
views
Comment: Comment: Extract NCBI's refseq assembly accession number from nuccore IDs
updated 3.9 years ago by 45k • written 3.9 years ago by ▴ 10
0
votes
0
replies
2.3k
views
Comment: Comment: Extract NCBI's refseq assembly accession number from nuccore IDs
updated 3.9 years ago by 45k • written 3.9 years ago by ▴ 10
0
votes
1
reply
2.3k
views
Comment: Comment: Extract NCBI's refseq assembly accession number from nuccore IDs
3.9 years ago by genomes_and_MGEs ▴ 10
0
votes
2
replies
2.3k
views
Comment: Comment: Extract NCBI's refseq assembly accession number from nuccore IDs
3.9 years ago by genomes_and_MGEs ▴ 10
0
votes
0
replies
8.8k
views
Comment: C: Extract fasta sequence from gff3 file
4.1 years ago by genomes_and_MGEs ▴ 10
0
votes
1
reply
8.8k
views
Comment: C: Extract fasta sequence from gff3 file
4.1 years ago by genomes_and_MGEs ▴ 10
0
votes
1
reply
8.8k
views
Comment: C: Extract fasta sequence from gff3 file
4.1 years ago by genomes_and_MGEs ▴ 10
1
vote
2
replies
776
views
Filter rows below a given threshold
sequence
updated 4.4 years ago by 36k • written 4.4 years ago by ▴ 10
12
votes
6
replies
1.7k
views
6 follow
Converting to decimal values
sequence
updated 4.4 years ago by 35k • written 4.4 years ago by ▴ 10
1
vote
1
reply
604
views
Convert coverage values to number of occurrence
sequence gene
updated 4.4 years ago by 166k • written 4.4 years ago by ▴ 10
2
votes
2
replies
982
views
Only copy multifasta files from one directory to another
sequence assembly
updated 4.6 years ago by 22k • written 4.6 years ago by ▴ 10
5
votes
2
replies
1.6k
views
Removing text after last underscore on given column
sequence
updated 4.6 years ago by 13k • written 4.6 years ago by ▴ 10
1
vote
2
replies
931
views
Extracting genomic regions based on coordinates in a text file
sequence
updated 4.6 years ago by 166k • written 4.6 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Comment: C: Append fasta header to corresponding fasta filename
updated 4.7 years ago by 45k • written 4.7 years ago by ▴ 10
1
vote
3
replies
1.1k
views
Append fasta header to corresponding fasta filename
sequence
updated 4.7 years ago by 21k • written 4.7 years ago by ▴ 10
2
votes
8
replies
2.6k
views
7 follow
Batch rename protein fasta headers
sequence
updated 5.1 years ago by 22k • written 5.1 years ago by ▴ 10
0
votes
1
reply
1.8k
views
Comment: C: Extract protein files from nucleotide accession numbers
5.1 years ago by genomes_and_MGEs ▴ 10
0
votes
6
replies
1.8k
views
Extract protein files from nucleotide accession numbers
sequence
updated 5.1 years ago by ★ 3.8k • written 5.1 years ago by ▴ 10
0
votes
0
replies
2.6k
views
Comment: C: Batch rename protein fasta headers
5.1 years ago by genomes_and_MGEs ▴ 10
4
votes
2
replies
3.2k
views
Extract fasta sequnces not matching a list
Assembly sequence
updated 5.2 years ago by 151k • written 5.2 years ago by ▴ 10
0
votes
1
reply
768
views
List names in column that match a given word in another column
sequence genome
updated 5.7 years ago by 151k • written 5.7 years ago by ▴ 10
0
votes
0
replies
8.7k
views
Comment: C: Kill nohup bash process
5.9 years ago by genomes_and_MGEs ▴ 10
14
votes
9
replies
8.7k
views
Kill nohup bash process
genome sequence
updated 5.9 years ago by 5.8k • written 5.9 years ago by ▴ 10
0
votes
0
replies
1.2k
views
Comment: C: Download genomes within a given GC content interval
5.9 years ago by genomes_and_MGEs ▴ 10
4
votes
2
replies
1.2k
views
Download genomes within a given GC content interval
Assembly genome sequence
updated 5.9 years ago by 151k • written 5.9 years ago by ▴ 10
5
votes
5
replies
1.6k
views
Remove text flanking .. on fasta-headers
genome sequence
updated 6.1 years ago by 22k • written 6.1 years ago by ▴ 10
0
votes
1
reply
1.6k
views
Comment: C: Remove text flanking .. on fasta-headers
6.1 years ago by genomes_and_MGEs ▴ 10
0
votes
0
replies
5.9k
views
Comment: C: Outputting strain name on prokka annotation
6.1 years ago by genomes_and_MGEs ▴ 10
74 results • Page 1 of 2
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