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18
votes
21
replies
48k
views
11 follow
R org.Hs.eg.db matching ensembl gene ids with gene symbol
bioconductor R
updated 3.7 years ago by ▴ 10 • written 9.3 years ago by ▴ 330
0
votes
1
reply
1.6k
views
vcf-compare alternative in R
R vcf
updated 4.8 years ago by ▴ 360 • written 4.8 years ago by ▴ 330
0
votes
2
replies
933
views
find NBCI transcript with longest coding sequence for a list of human genes
ncbi transcript cds
4.9 years ago by User6891 ▴ 330
0
votes
0
replies
6.7k
views
Comment: C: count number of variants per gene from .vcf annovar&snpsift
updated 5.5 years ago by 45k • written 11.2 years ago by ▴ 330
0
votes
0
replies
11k
views
Comment: C: R extract the sequences from DNAStringset
updated 6.1 years ago by 152k • written 6.1 years ago by ▴ 330
1
vote
0
replies
11k
views
Answer: A: R extract the sequences from DNAStringset
6.1 years ago by User6891 ▴ 330
2
votes
6
replies
11k
views
R extract the sequences from DNAStringset
R
6.1 years ago by User6891 ▴ 330
0
votes
0
replies
11k
views
Comment: C: R extract the sequences from DNAStringset
6.1 years ago by User6891 ▴ 330
10
votes
6
replies
9.6k
views
add UMI sequences to fastq read name
UMI Illumina fastq
updated 6.4 years ago by 21k • written 6.4 years ago by ▴ 330
0
votes
0
replies
9.6k
views
Comment: C: add UMI sequences to fastq read name
6.4 years ago by User6891 ▴ 330
15
votes
11
replies
26k
views
7 follow
Heatmap.2 R for differentially expressed genes DeSEQ2
R
updated 6.8 years ago by 45k • written 9.3 years ago by ▴ 330
0
votes
2
replies
26k
views
Comment: C: Heatmap.2 R for differentially expressed genes DeSEQ2
updated 6.8 years ago by 45k • written 9.3 years ago by ▴ 330
0
votes
1
reply
26k
views
Comment: C: Heatmap.2 R for differentially expressed genes DeSEQ2
updated 6.8 years ago by 45k • written 9.3 years ago by ▴ 330
7
votes
3
replies
5.2k
views
number of private variants in a human exome
next-gen exome
updated 8.5 years ago by 20 • written 10.8 years ago by ▴ 330
0
votes
1
reply
3.0k
views
bed file intersection overlapping regions in at least x files
bed regions
updated 8.9 years ago by 36k • written 8.9 years ago by ▴ 330
0
votes
0
replies
2.7k
views
merlin output error
merlin
9.2 years ago by User6891 ▴ 330
0
votes
0
replies
4.6k
views
Comment: C: merlin .ped file
9.4 years ago by User6891 ▴ 330
0
votes
1
reply
4.6k
views
Comment: C: merlin .ped file
9.4 years ago by User6891 ▴ 330
0
votes
1
reply
4.6k
views
Comment: C: merlin .ped file
9.4 years ago by User6891 ▴ 330
2
votes
5
replies
4.6k
views
merlin .ped file
merlin pedigree linkage
updated 2.9 years ago by 45k • written 9.4 years ago by ▴ 330
3
votes
1
reply
1.5k
views
match ucsc and ncbi transcript identifiers
ncbi ucsc
updated 2.8 years ago by 45k • written 9.7 years ago by ▴ 330
0
votes
0
replies
2.5k
views
Comment: C: family based linkage study - design and analysis
10.0 years ago by User6891 ▴ 330
0
votes
2
replies
2.5k
views
family based linkage study - design and analysis
linkage
updated 2.5 years ago by 45k • written 10.0 years ago by ▴ 330
4
votes
1
reply
3.9k
views
picard Hs metrics and MarkDuplicates
picard
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 330
0
votes
1
reply
4.4k
views
Comment: Comment: bwa mapping after fastx-trimmer
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 330
0
votes
1
reply
4.4k
views
Comment: Comment: bwa mapping after fastx-trimmer
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 330
2
votes
7
replies
4.4k
views
bwa mapping after fastx-trimmer
fastx-toolkit bwa
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 330
6
votes
9
replies
6.9k
views
longest transcript NCBI NM_ids
ucsc ncbi transcript gene
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 330
0
votes
0
replies
6.9k
views
Comment: C: longest transcript NCBI NM_ids
10.2 years ago by User6891 ▴ 330
0
votes
1
reply
6.9k
views
Answer: A: longest transcript NCBI NM_ids
10.2 years ago by User6891 ▴ 330
5
votes
2
replies
5.2k
views
merge .fastq reads of different lengths and align
fastq bwa
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 330
6
votes
7
replies
7.6k
views
Finding genomic location of a list of sequences in human reference genome
SNP genome
updated 3.3 years ago by 45k • written 10.6 years ago by ▴ 330
0
votes
0
replies
13k
views
Comment: Comment: blastn for short sequences
updated 3.3 years ago by 45k • written 10.6 years ago by ▴ 330
8
votes
3
replies
13k
views
blastn for short sequences
blast
updated 3.3 years ago by 45k • written 10.6 years ago by ▴ 330
0
votes
1
reply
7.6k
views
Comment: C: Finding genomic location of a list of sequences in human reference genome
10.6 years ago by User6891 ▴ 330
0
votes
0
replies
7.6k
views
Comment: Comment: Finding genomic location of a list of sequences in human reference genome
updated 3.3 years ago by 45k • written 10.6 years ago by ▴ 330
2
votes
4
replies
11k
views
map cDNA position on genomic position
cDNA mutation genome sequencing
updated 2.6 years ago by 45k • written 10.7 years ago by ▴ 330
4
votes
1
reply
8.8k
views
correct notation of indels/duplication in .vcf file
vcf duplications indels
updated 3.4 years ago by 45k • written 10.7 years ago by ▴ 330
1
vote
1
reply
5.2k
views
Comment: C: number of private variants in a human exome
10.8 years ago by User6891 ▴ 330
5
votes
1
reply
2.8k
views
MAF 1000g ESP6500 for chrX
chromosome-x variants
updated 2.5 years ago by 45k • written 10.8 years ago by ▴ 330
1
vote
0
replies
3.0k
views
Answer: Answer: Copy Number Detection with ExomeDepth.. parsing error of bam file
updated 3.6 years ago by 45k • written 11.0 years ago by ▴ 330
16
votes
2
replies
4.2k
views
small case-control exome sequencing study
exome
updated 3.6 years ago by 45k • written 11.0 years ago by ▴ 330
0
votes
3
replies
3.7k
views
split 1000genomes .vcf per individual
NGS 1000genomes vcf
11.0 years ago by User6891 ▴ 330
0
votes
1
reply
3.7k
views
Answer: A: split 1000genomes .vcf per individual
11.0 years ago by User6891 ▴ 330
2
votes
3
replies
6.7k
views
count number of variants per gene from .vcf annovar&snpsift
annovar snpsift vcf gene
updated 3.7 years ago by 45k • written 11.2 years ago by ▴ 330
0
votes
1
reply
5.1k
views
Comment: C: How To Get Strand Information For List Of Intervals In .Bed File (To Use With Pi
11.5 years ago by User6891 ▴ 330
3
votes
3
replies
5.1k
views
How To Get Strand Information For List Of Intervals In .Bed File (To Use With Picard Calculatehsmetrics)
strand bed picard
updated 11.5 years ago by 24k • written 11.5 years ago by ▴ 330
0
votes
0
replies
2.3k
views
Comment: C: Near Target Reads In Whole Exome Data
11.6 years ago by User6891 ▴ 330
1
vote
2
replies
2.3k
views
Near Target Reads In Whole Exome Data
exome-sequencing read
updated 11.6 years ago by ▴ 350 • written 11.6 years ago by ▴ 330
0
votes
1
reply
5.3k
views
Comment: C: Total Number Of Mapped Bases In Exome Ngs Data
11.6 years ago by User6891 ▴ 330
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