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18
votes
21
replies
45k
views
11 follow
R org.Hs.eg.db matching ensembl gene ids with gene symbol
bioconductor R
updated 3.2 years ago by ▴ 10 • written 8.8 years ago by ▴ 330
0
votes
1
reply
1.5k
views
vcf-compare alternative in R
R vcf
updated 4.2 years ago by ▴ 370 • written 4.2 years ago by ▴ 330
0
votes
2
replies
792
views
find NBCI transcript with longest coding sequence for a list of human genes
ncbi transcript cds
4.4 years ago by User6891 ▴ 330
0
votes
0
replies
6.5k
views
Comment: C: count number of variants per gene from .vcf annovar&snpsift
updated 4.9 years ago by 44k • written 10.6 years ago by ▴ 330
0
votes
0
replies
10k
views
Comment: C: R extract the sequences from DNAStringset
updated 5.6 years ago by 147k • written 5.6 years ago by ▴ 330
2
votes
6
replies
10k
views
R extract the sequences from DNAStringset
R
5.6 years ago by User6891 ▴ 330
1
vote
0
replies
10k
views
Answer: A: R extract the sequences from DNAStringset
5.6 years ago by User6891 ▴ 330
0
votes
0
replies
10k
views
Comment: C: R extract the sequences from DNAStringset
5.6 years ago by User6891 ▴ 330
10
votes
6
replies
8.9k
views
add UMI sequences to fastq read name
UMI Illumina fastq
updated 5.9 years ago by 20k • written 5.9 years ago by ▴ 330
0
votes
0
replies
8.9k
views
Comment: C: add UMI sequences to fastq read name
5.9 years ago by User6891 ▴ 330
15
votes
11
replies
25k
views
7 follow
Heatmap.2 R for differentially expressed genes DeSEQ2
R
updated 6.2 years ago by 44k • written 8.8 years ago by ▴ 330
0
votes
2
replies
25k
views
Comment: C: Heatmap.2 R for differentially expressed genes DeSEQ2
updated 6.2 years ago by 44k • written 8.8 years ago by ▴ 330
0
votes
1
reply
25k
views
Comment: C: Heatmap.2 R for differentially expressed genes DeSEQ2
updated 6.2 years ago by 44k • written 8.8 years ago by ▴ 330
7
votes
3
replies
5.0k
views
number of private variants in a human exome
next-gen exome
updated 8.0 years ago by 20 • written 10.3 years ago by ▴ 330
0
votes
1
reply
2.9k
views
bed file intersection overlapping regions in at least x files
bed regions
updated 8.3 years ago by 36k • written 8.3 years ago by ▴ 330
0
votes
0
replies
2.6k
views
merlin output error
merlin
8.6 years ago by User6891 ▴ 330
0
votes
0
replies
4.2k
views
Comment: C: merlin .ped file
8.9 years ago by User6891 ▴ 330
0
votes
1
reply
4.2k
views
Comment: C: merlin .ped file
8.9 years ago by User6891 ▴ 330
0
votes
1
reply
4.2k
views
Comment: C: merlin .ped file
8.9 years ago by User6891 ▴ 330
2
votes
5
replies
4.2k
views
merlin .ped file
merlin pedigree linkage
updated 2.3 years ago by 44k • written 8.9 years ago by ▴ 330
3
votes
1
reply
1.4k
views
match ucsc and ncbi transcript identifiers
ncbi ucsc
updated 2.2 years ago by 44k • written 9.2 years ago by ▴ 330
0
votes
0
replies
2.4k
views
Comment: C: family based linkage study - design and analysis
9.4 years ago by User6891 ▴ 330
0
votes
2
replies
2.4k
views
family based linkage study - design and analysis
linkage
updated 24 months ago by 44k • written 9.4 years ago by ▴ 330
4
votes
1
reply
3.7k
views
picard Hs metrics and MarkDuplicates
picard
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 330
0
votes
1
reply
4.0k
views
Comment: Comment: bwa mapping after fastx-trimmer
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 330
0
votes
1
reply
4.0k
views
Comment: Comment: bwa mapping after fastx-trimmer
updated 2.4 years ago by 44k • written 9.7 years ago by ▴ 330
2
votes
7
replies
4.0k
views
bwa mapping after fastx-trimmer
fastx-toolkit bwa
updated 2.4 years ago by 44k • written 9.7 years ago by ▴ 330
6
votes
9
replies
6.3k
views
longest transcript NCBI NM_ids
ucsc ncbi transcript gene
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 330
0
votes
0
replies
6.3k
views
Comment: C: longest transcript NCBI NM_ids
9.7 years ago by User6891 ▴ 330
0
votes
1
reply
6.3k
views
Answer: A: longest transcript NCBI NM_ids
9.7 years ago by User6891 ▴ 330
5
votes
2
replies
5.0k
views
merge .fastq reads of different lengths and align
fastq bwa
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 330
6
votes
7
replies
7.2k
views
Finding genomic location of a list of sequences in human reference genome
SNP genome
updated 2.8 years ago by 44k • written 10.0 years ago by ▴ 330
0
votes
0
replies
13k
views
Comment: Comment: blastn for short sequences
updated 2.8 years ago by 44k • written 10.0 years ago by ▴ 330
8
votes
3
replies
13k
views
blastn for short sequences
blast
updated 2.8 years ago by 44k • written 10.0 years ago by ▴ 330
0
votes
1
reply
7.2k
views
Comment: C: Finding genomic location of a list of sequences in human reference genome
10.0 years ago by User6891 ▴ 330
0
votes
0
replies
7.2k
views
Comment: Comment: Finding genomic location of a list of sequences in human reference genome
updated 2.8 years ago by 44k • written 10.0 years ago by ▴ 330
2
votes
4
replies
11k
views
map cDNA position on genomic position
cDNA mutation genome sequencing
updated 2.1 years ago by 44k • written 10.1 years ago by ▴ 330
4
votes
1
reply
8.4k
views
correct notation of indels/duplication in .vcf file
vcf duplications indels
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 330
1
vote
1
reply
5.0k
views
Comment: C: number of private variants in a human exome
10.3 years ago by User6891 ▴ 330
5
votes
1
reply
2.7k
views
MAF 1000g ESP6500 for chrX
chromosome-x variants
updated 23 months ago by 44k • written 10.3 years ago by ▴ 330
1
vote
0
replies
2.9k
views
Answer: Answer: Copy Number Detection with ExomeDepth.. parsing error of bam file
updated 3.1 years ago by 44k • written 10.4 years ago by ▴ 330
16
votes
2
replies
4.0k
views
small case-control exome sequencing study
exome
updated 3.1 years ago by 44k • written 10.4 years ago by ▴ 330
0
votes
1
reply
3.5k
views
Answer: A: split 1000genomes .vcf per individual
10.5 years ago by User6891 ▴ 330
0
votes
3
replies
3.5k
views
split 1000genomes .vcf per individual
NGS 1000genomes vcf
10.5 years ago by User6891 ▴ 330
2
votes
3
replies
6.5k
views
count number of variants per gene from .vcf annovar&snpsift
annovar snpsift vcf gene
updated 3.2 years ago by 44k • written 10.6 years ago by ▴ 330
0
votes
1
reply
4.8k
views
Comment: C: How To Get Strand Information For List Of Intervals In .Bed File (To Use With Pi
10.9 years ago by User6891 ▴ 330
3
votes
3
replies
4.8k
views
How To Get Strand Information For List Of Intervals In .Bed File (To Use With Picard Calculatehsmetrics)
strand bed picard
updated 10.9 years ago by 24k • written 10.9 years ago by ▴ 330
0
votes
0
replies
2.1k
views
Comment: C: Near Target Reads In Whole Exome Data
11.0 years ago by User6891 ▴ 330
1
vote
2
replies
2.1k
views
Near Target Reads In Whole Exome Data
exome-sequencing read
updated 11.0 years ago by ▴ 330 • written 11.0 years ago by ▴ 330
0
votes
1
reply
4.9k
views
Comment: C: Total Number Of Mapped Bases In Exome Ngs Data
11.0 years ago by User6891 ▴ 330
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