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0
votes
1
reply
486
views
merging .cool files of replicates
cool interaction-matrix hic
updated 4 months ago by ▴ 350 • written 4 months ago by ▴ 40
0
votes
4
replies
837
views
Check the normalizations available in a hic file?
juicer-tools hic-pro hic
4 months ago by rls_08 ▴ 40
0
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0
replies
837
views
Answer: Answer: Check the normalizations available in a hic file?
4 months ago by rls_08 ▴ 40
0
votes
0
replies
837
views
Comment: Comment: Check the normalizations available in a hic file?
4 months ago by rls_08 ▴ 40
0
votes
2
replies
799
views
Cluster regions based on similar/dissimilar ChIP-seq signal profile across the whole region and not just overall mean signal.
clustering chip-seq deeptools
updated 8 months ago by ★ 4.7k • written 8 months ago by ▴ 40
0
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0
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2.6k
views
Comment: Comment: Statistical tests for NGS profile/enrichment plots
10 months ago by rls_08 ▴ 40
0
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0
replies
8.2k
views
Comment: Comment: Merge two bigwig(+/- strand) files from RNA-seq
18 months ago by rls_08 ▴ 40
0
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0
replies
633
views
PANTHER functional classification
PANTHER Gene-Ontology
updated 19 months ago by 45k • written 19 months ago by ▴ 40
0
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1
reply
1.2k
views
Comment: Comment: Calling large domains of signal enrichment (broad peaks) from log2,input normali
21 months ago by rls_08 ▴ 40
0
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3
replies
1.2k
views
Calling large domains of signal enrichment (broad peaks) from log2,input normalized ChIP-seq data
chip-seq peak-caller normalization broad-domains
updated 21 months ago by ★ 1.5k • written 21 months ago by ▴ 40
0
votes
1
reply
998
views
Reducing the size of raw sequencing data in fastq format by using a simplified quality score
fastq compression
updated 2.1 years ago by 88k • written 2.1 years ago by ▴ 40
0
votes
0
replies
520
views
Getting an "double free or corruption (out)" error when running wigToBigWig
wigToBigwig
2.2 years ago by rls_08 ▴ 40
0
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0
replies
623
views
Any straightforward way to re-bin a bigWig file?
bigwig
2.2 years ago by rls_08 ▴ 40
0
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0
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11k
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Comment: Comment: smoothing or binning bigWig file
2.2 years ago by rls_08 ▴ 40
1
vote
2
replies
755
views
in an RNA-seq experiment, what threshold would you use to define a set of expressed or active genes in a cell line?
RNA-seq
updated 2.2 years ago by 21k • written 2.2 years ago by ▴ 40
0
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0
replies
438
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displaying results of different RNA-seq projects in R shiny
RNA-seq shiny R
2.2 years ago by rls_08 ▴ 40
1
vote
0
replies
11k
views
Comment: C: smoothing or binning bigWig file
4.6 years ago by rls_08 ▴ 40
0
votes
0
replies
10k
views
Comment: C: how to merge overlapping intervals in a bedgraph file
5.3 years ago by rls_08 ▴ 40
1
vote
0
replies
1.6k
views
obtaining mean contact/interaction frequency of a given 2D genomic region (loops from from bedpe file) from a hic matrix
HiC Hi-C Bedpe matrix R
5.5 years ago by rls_08 ▴ 40
0
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1
reply
3.6k
views
Comment: A: [ChIP-seq. signal plot] How to align the based line of different samples?
5.8 years ago by rls_08 ▴ 40
0
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1
reply
19k
views
Comment: C: STAR align multiple files
6.1 years ago by rls_08 ▴ 40
0
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0
replies
2.6k
views
Comment: C: What variant callers are faster than samtools?
6.3 years ago by rls_08 ▴ 40
2
votes
2
replies
5.8k
views
Answer: A: install Primer3 on Ubuntu
6.4 years ago by rls_08 ▴ 40
0
votes
1
reply
5.8k
views
Comment: A: install Primer3 on Ubuntu
6.4 years ago by rls_08 ▴ 40
24 results • Page 1 of 1
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