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408
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Cluster regions based on similar/dissimilar ChIP-seq signal profile across the whole region and not just overall mean signal.
clustering chip-seq deeptools
updated 5 weeks ago by ★ 4.5k • written 5 weeks ago by ▴ 40
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2.2k
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Comment: Comment: Statistical tests for NGS profile/enrichment plots
3 months ago by rls_08 ▴ 40
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7.4k
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Comment: Comment: Merge two bigwig(+/- strand) files from RNA-seq
11 months ago by rls_08 ▴ 40
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0
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429
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PANTHER functional classification
PANTHER Gene-Ontology
updated 12 months ago by 44k • written 12 months ago by ▴ 40
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1
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949
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Comment: Comment: Calling large domains of signal enrichment (broad peaks) from log2,input normali
14 months ago by rls_08 ▴ 40
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3
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949
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Calling large domains of signal enrichment (broad peaks) from log2,input normalized ChIP-seq data
chip-seq peak-caller normalization broad-domains
updated 14 months ago by ★ 1.3k • written 14 months ago by ▴ 40
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1
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813
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Reducing the size of raw sequencing data in fastq format by using a simplified quality score
fastq compression
updated 18 months ago by 85k • written 18 months ago by ▴ 40
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0
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397
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Getting an "double free or corruption (out)" error when running wigToBigWig
wigToBigwig
19 months ago by rls_08 ▴ 40
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495
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Any straightforward way to re-bin a bigWig file?
bigwig
20 months ago by rls_08 ▴ 40
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9.9k
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Comment: Comment: smoothing or binning bigWig file
20 months ago by rls_08 ▴ 40
1
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2
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623
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in an RNA-seq experiment, what threshold would you use to define a set of expressed or active genes in a cell line?
RNA-seq
updated 20 months ago by 20k • written 20 months ago by ▴ 40
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351
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displaying results of different RNA-seq projects in R shiny
RNA-seq shiny R
20 months ago by rls_08 ▴ 40
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0
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9.9k
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Comment: C: smoothing or binning bigWig file
4.0 years ago by rls_08 ▴ 40
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9.1k
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Comment: C: how to merge overlapping intervals in a bedgraph file
4.7 years ago by rls_08 ▴ 40
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1.5k
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obtaining mean contact/interaction frequency of a given 2D genomic region (loops from from bedpe file) from a hic matrix
HiC Hi-C Bedpe matrix R
4.9 years ago by rls_08 ▴ 40
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1
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3.2k
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Comment: A: [ChIP-seq. signal plot] How to align the based line of different samples?
5.2 years ago by rls_08 ▴ 40
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1
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18k
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Comment: C: STAR align multiple files
5.6 years ago by rls_08 ▴ 40
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2.3k
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Comment: C: What variant callers are faster than samtools?
5.7 years ago by rls_08 ▴ 40
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2
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5.1k
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Answer: A: install Primer3 on Ubuntu
5.9 years ago by rls_08 ▴ 40
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1
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5.1k
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Comment: A: install Primer3 on Ubuntu
5.9 years ago by rls_08 ▴ 40
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