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3
votes
2
replies
1.4k
views
What's the best 3rd party software for doing analysis on 10X Genomics ATAC-seq data?
atac-seq 10X
updated 3.1 years ago by ▴ 800 • written 6.1 years ago by ▴ 200
1
vote
3
replies
2.4k
views
Nanopore structural variant calling - more than 2 alleles on IGV track?
nanopore structural variant igv vcf
updated 5.1 years ago by • 0 • written 5.5 years ago by ▴ 200
0
votes
0
replies
3.0k
views
Comment: C: Workflow for structural variants from long read sequencing data
5.2 years ago by BioinformaticsLad ▴ 200
0
votes
1
reply
3.0k
views
Comment: C: Workflow for structural variants from long read sequencing data
5.2 years ago by BioinformaticsLad ▴ 200
0
votes
0
replies
2.4k
views
Comment: C: Normalizing genes between arrays with Limma
5.3 years ago by BioinformaticsLad ▴ 200
3
votes
2
replies
2.4k
views
Normalizing genes between arrays with Limma
microarray limma
updated 5.3 years ago by ★ 8.2k • written 5.3 years ago by ▴ 200
0
votes
1
reply
5.3k
views
Comment: C: How does Kraken2 Work?
5.4 years ago by BioinformaticsLad ▴ 200
0
votes
0
replies
20k
views
Comment: C: What is the difference between GRCh37 and hs37? And hg19?
5.6 years ago by BioinformaticsLad ▴ 200
0
votes
0
replies
2.3k
views
Comment: C: Tool to calculate insertion, deletion, mismatch rate in alignments?
5.6 years ago by BioinformaticsLad ▴ 200
0
votes
0
replies
1.6k
views
Comment: C: Detection of antibiotic resistance genes in shotgun metagenomic samples
5.6 years ago by BioinformaticsLad ▴ 200
0
votes
0
replies
773
views
BBMap reformat.sh qahist statistics interpretation?
bbmap
5.7 years ago by BioinformaticsLad ▴ 200
2
votes
2
replies
2.3k
views
Tool to calculate insertion, deletion, mismatch rate in alignments?
alignment
updated 5.7 years ago by 35k • written 5.7 years ago by ▴ 200
0
votes
1
reply
2.1k
views
Comment: C: Filter human parasites from taxonomic profiling with Kraken
5.7 years ago by BioinformaticsLad ▴ 200
0
votes
1
reply
1.6k
views
Comment: C: Detection of antibiotic resistance genes in shotgun metagenomic samples
5.7 years ago by BioinformaticsLad ▴ 200
4
votes
7
replies
1.6k
views
Detection of antibiotic resistance genes in shotgun metagenomic samples
metagenomics
updated 5.7 years ago by ★ 2.2k • written 5.7 years ago by ▴ 200
0
votes
1
reply
1.6k
views
Comment: C: Detection of antibiotic resistance genes in shotgun metagenomic samples
5.7 years ago by BioinformaticsLad ▴ 200
0
votes
0
replies
5.1k
views
Comment: C: Shotgun metagenomics high duplication read rate - how high is too high?
5.8 years ago by BioinformaticsLad ▴ 200
8
votes
5
replies
5.1k
views
Shotgun metagenomics high duplication read rate - how high is too high?
WMS shotgun metagenomics
updated 5.8 years ago by 7.6k • written 5.8 years ago by ▴ 200
0
votes
0
replies
5.1k
views
Comment: C: Shotgun metagenomics high duplication read rate - how high is too high?
5.8 years ago by BioinformaticsLad ▴ 200
0
votes
0
replies
744
views
Shotgun metagenomic positive control dataset?
shotgun metagenomic
5.8 years ago by BioinformaticsLad ▴ 200
0
votes
1
reply
1.3k
views
Comment: C: How are high phred scores represented?
5.9 years ago by BioinformaticsLad ▴ 200
3
votes
3
replies
1.3k
views
How are high phred scores represented?
consensus assembly
updated 5.9 years ago by 7.6k • written 5.9 years ago by ▴ 200
5
votes
2
replies
2.0k
views
Necessary to filter out nanopore (or PacBio) reads before mapping?
nanopore minimap2 alignment mapping
updated 6.0 years ago by 20 • written 6.1 years ago by ▴ 200
0
votes
0
replies
9.5k
views
Comment: C: How do I use Glimmer 3.02?
6.1 years ago by BioinformaticsLad ▴ 200
0
votes
1
reply
9.5k
views
Comment: C: How do I use Glimmer 3.02?
6.1 years ago by BioinformaticsLad ▴ 200
0
votes
1
reply
9.5k
views
Comment: C: How do I use Glimmer 3.02?
6.1 years ago by BioinformaticsLad ▴ 200
0
votes
0
replies
2.5k
views
Comment: C: Programs for bacterial gene prediction/annotation for nanopore assembly?
6.1 years ago by BioinformaticsLad ▴ 200
1
vote
0
replies
2.5k
views
Comment: C: Programs for bacterial gene prediction/annotation for nanopore assembly?
6.1 years ago by BioinformaticsLad ▴ 200
0
votes
1
reply
9.5k
views
Comment: C: How do I use Glimmer 3.02?
6.1 years ago by BioinformaticsLad ▴ 200
0
votes
2
replies
2.5k
views
Comment: C: Programs for bacterial gene prediction/annotation for nanopore assembly?
6.1 years ago by BioinformaticsLad ▴ 200
0
votes
1
reply
9.5k
views
Comment: C: How do I use Glimmer 3.02?
6.1 years ago by BioinformaticsLad ▴ 200
9
votes
7
replies
2.5k
views
Programs for bacterial gene prediction/annotation for nanopore assembly?
gene prediction annotation nanopore prokka glimmer
updated 6.1 years ago by ★ 2.1k • written 6.1 years ago by ▴ 200
0
votes
1
reply
9.5k
views
Comment: C: How do I use Glimmer 3.02?
6.1 years ago by BioinformaticsLad ▴ 200
0
votes
1
reply
9.5k
views
Comment: C: How do I use Glimmer 3.02?
6.1 years ago by BioinformaticsLad ▴ 200
0
votes
1
reply
9.5k
views
Comment: C: How do I use Glimmer 3.02?
6.1 years ago by BioinformaticsLad ▴ 200
0
votes
0
replies
2.5k
views
Comment: C: Minion reads error rate for indels and snps
6.1 years ago by BioinformaticsLad ▴ 200
1
vote
1
reply
2.5k
views
Comment: C: Minion reads error rate for indels and snps
6.1 years ago by BioinformaticsLad ▴ 200
1
vote
1
reply
2.5k
views
Comment: C: Minion reads error rate for indels and snps
6.1 years ago by BioinformaticsLad ▴ 200
0
votes
1
reply
1.6k
views
Comment: C: Looking for suggestions: what is used to mainly place different sub-phyla in the
6.2 years ago by BioinformaticsLad ▴ 200
1
vote
1
reply
1.6k
views
Comment: C: Whole Genome Assembly with Large Deletions
6.2 years ago by BioinformaticsLad ▴ 200
6
votes
1
reply
34k
views
Comment: C: Guppy basecaller ONT
6.2 years ago by BioinformaticsLad ▴ 200
0
votes
1
reply
34k
views
Comment: C: Guppy basecaller ONT
6.2 years ago by BioinformaticsLad ▴ 200
0
votes
2
replies
34k
views
Comment: C: Guppy basecaller ONT
6.2 years ago by BioinformaticsLad ▴ 200
1
vote
0
replies
2.6k
views
Comment: C: Nanopore reads of simple repeats
6.2 years ago by BioinformaticsLad ▴ 200
0
votes
1
reply
2.6k
views
Comment: C: Nanopore reads of simple repeats
6.2 years ago by BioinformaticsLad ▴ 200
0
votes
1
reply
2.6k
views
Comment: C: Nanopore reads of simple repeats
6.2 years ago by BioinformaticsLad ▴ 200
0
votes
1
reply
2.6k
views
Comment: C: Nanopore reads of simple repeats
6.2 years ago by BioinformaticsLad ▴ 200
6
votes
8
replies
2.6k
views
Nanopore reads of simple repeats
nanopore
6.2 years ago by BioinformaticsLad ▴ 200
4
votes
1
reply
970
views
Methods to determine if a nanopore 1-D read is from the forward or reverse strand without a reference?
nanopore
updated 6.2 years ago by 48k • written 6.2 years ago by ▴ 200
4
votes
2
replies
1.6k
views
Oxford Nanopore insertion vs deletion rates
basecalling nanopore
updated 6.2 years ago by 48k • written 6.3 years ago by ▴ 200
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