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Comment: Comment: Failed to connect to cibersortx.stanford.edu:80: Connection timed out
2.5 years ago by Researcher ▴ 130
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Comment: Comment: Failed to connect to cibersortx.stanford.edu:80: Connection timed out
2.5 years ago by Researcher ▴ 130
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3
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How to make a read count matrix from multiple bed files generated by ROSE
super-enhancers rose chipseq diffbind H3K27Ac
updated 2.8 years ago by ▴ 40 • written 5.3 years ago by ▴ 130
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Are the deconvolved gene expression values (already in fraction) from Cibersotx normalized or require any further normalization like TMM?
Cibersortx deconvolution gene expression
4.2 years ago by Researcher ▴ 130
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Comment: C: Integration of the TCGA's Agilent 244K and Affymetrix data
4.2 years ago by Researcher ▴ 130
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3
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1.1k
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Integration of the TCGA's Agilent 244K and Affymetrix data
Gene expression Agilent 244K Affymetrix TCGA
updated 4.2 years ago by ★ 18k • written 4.2 years ago by ▴ 130
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Comment: C: Using limma to find differentially methylated probes across clusters
4.3 years ago by Researcher ▴ 130
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3.1k
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Comment: C: How to identify cluster membership from the tSNE coordinates?
updated 4.5 years ago by 149k • written 4.5 years ago by ▴ 130
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How to identify cluster membership from the tSNE coordinates?
tSNE dimention reduction dimensionality reduction
updated 4.5 years ago by ★ 28k • written 4.5 years ago by ▴ 130
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Comment: C: How does AverageExpression() and aggregateData() differ from each other?
4.5 years ago by Researcher ▴ 130
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How does AverageExpression() and aggregateData() differ from each other?
Suerat AverageExpression aggregateData
4.5 years ago by Researcher ▴ 130
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4.5k
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Comment: C: How does AverageExpression() and aggregateData()
4.5 years ago by Researcher ▴ 130
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4.3k
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Comment: C: Problem with AverageExpression() in Seurat
4.5 years ago by Researcher ▴ 130
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4.3k
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Problem with AverageExpression() in Seurat
Seurat scRNA Seq AverageExpression clusters
updated 4.5 years ago by 12k • written 4.5 years ago by ▴ 130
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Comment: C: Problem with AverageExpression() in Seurat
updated 4.5 years ago by 149k • written 4.5 years ago by ▴ 130
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4.3k
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Comment: C: Problem with AverageExpression() in Seurat
updated 4.5 years ago by 149k • written 4.5 years ago by ▴ 130
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1
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1.6k
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How to convert 10X single nuclear RNA Seq bam file to fastq?
10x Genomics bamtofastq cellranger snRNA
4.7 years ago by Researcher ▴ 130
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1
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1.5k
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Looking for suggestions if ROSE can handle multiple samples together?
ChIP-Seq ROSE Super Enhancer H3K27Ac
updated 4.9 years ago by ★ 18k • written 4.9 years ago by ▴ 130
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Comment: C: Unable to convert single cell RNA Seq bam to fastq using cellranger's bamtofastq
4.9 years ago by Researcher ▴ 130
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Unable to convert single cell RNA Seq bam to fastq using cellranger's bamtofastq
single cell cellranger single cell RNA Seq
4.9 years ago by Researcher ▴ 130
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Comment: C: GSVA for mouse scRNA-Seq
5.0 years ago by Researcher ▴ 130
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5.0k
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Comment: C: Is there a way where we can convert TPM to raw read count?
5.0 years ago by Researcher ▴ 130
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Is there a way where we can convert TPM to raw read count?
RNA-Seq TPM Read Count Normalization
updated 3.1 years ago by • 0 • written 5.0 years ago by ▴ 130
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1.8k
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Comment: C: Seurat on both pooled and unpooled samples
5.3 years ago by Researcher ▴ 130
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1
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4.0k
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Comment: C: DiffBind to call differential binding of Super-enhancers from ROSE
5.3 years ago by Researcher ▴ 130
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1
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4.0k
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Comment: C: DiffBind to call differential binding of Super-enhancers from ROSE
5.3 years ago by Researcher ▴ 130
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1
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2.3k
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Comment: C: how to change the heatmap color of ConsensusClusterPlus
5.3 years ago by Researcher ▴ 130
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1
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4.0k
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Comment: C: DiffBind to call differential binding of Super-enhancers from ROSE
5.3 years ago by Researcher ▴ 130
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4.0k
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Comment: C: DiffBind to call differential binding of Super-enhancers from ROSE
5.3 years ago by Researcher ▴ 130
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12
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4.0k
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DiffBind to call differential binding of Super-enhancers from ROSE
Super-enhancers ROSE DiffBind chipseq
updated 5.3 years ago by ▴ 170 • written 5.3 years ago by ▴ 130
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1.3k
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Comment: C: Unsupervised clustering of super-enhancers from Chip Seq data generated from ROS
5.4 years ago by Researcher ▴ 130
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2
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1.3k
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Unsupervised clustering of super-enhancers from Chip Seq data generated from ROSE
ChIP-Seq Super enhancers ROSE peaks H3K27Ac
5.4 years ago by Researcher ▴ 130
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Comment: C: gff file of constituent enhancer For Young algorithm
5.4 years ago by Researcher ▴ 130
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8
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Are MACS2's summit or DiffBind's summit options are recommended for histone marks like H3K4me3, H3K27me3, H3K27ac and H3K4me1?
ChIP-Seq macs2 diffbind summit histone
updated 5.4 years ago by ★ 2.1k • written 5.5 years ago by ▴ 130
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1.9k
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Comment: C: Exploring H3K27me3 loss in cancer
5.4 years ago by Researcher ▴ 130
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1.0k
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Comment: C: Defining bivalent promoters with H3K4me3 and H3K27me3 ChIPseq data
5.4 years ago by Researcher ▴ 130
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1
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1.9k
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Comment: C: Exploring H3K27me3 loss in cancer
5.4 years ago by Researcher ▴ 130
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1.9k
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Comment: C: Exploring H3K27me3 loss in cancer
5.4 years ago by Researcher ▴ 130
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1
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1.9k
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Comment: C: Exploring H3K27me3 loss in cancer
5.4 years ago by Researcher ▴ 130
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10
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1.9k
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Exploring H3K27me3 loss in cancer
ChIP-Seq histone H3K27me3 macs2 diffbind
5.4 years ago by Researcher ▴ 130
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1.9k
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Comment: A: Exploring H3K27me3 loss in cancer
5.4 years ago by Researcher ▴ 130
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1
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1.4k
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Comment: A: issue with fastQ reads download from NCBI-SRA database?
5.4 years ago by Researcher ▴ 130
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0
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4.6k
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Comment: C: Are MACS2's summit or DiffBind's summit options are recommended for histone mark
5.5 years ago by Researcher ▴ 130
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0
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3.0k
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Comment: C: What are the most important filters provided by Mutect2 and how should we order
5.5 years ago by Researcher ▴ 130
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1
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4.6k
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Comment: C: Are MACS2's summit or DiffBind's summit options are recommended for histone mark
5.5 years ago by Researcher ▴ 130
0
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1
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3.0k
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What are the most important filters provided by Mutect2 and how should we order them based on their priority?
mutect2 somatic variations cancer normal pair
updated 5.5 years ago by 44k • written 5.5 years ago by ▴ 130
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4.2k
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Comment: C: [How to Save plots in R] DiffBind
5.5 years ago by Researcher ▴ 130
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0
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1.5k
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Comment: C: Gene Regulatory Network from Single-cell RNAseq
5.5 years ago by Researcher ▴ 130
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3
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1.5k
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Gene Regulatory Network from Single-cell RNAseq
scRNA Seq Network bigSCale2 Regulatory Network
5.5 years ago by Researcher ▴ 130
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0
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1.5k
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Comment: C: Gene Regulatory Network from Single-cell RNAseq
5.5 years ago by Researcher ▴ 130
87 results • Page 1 of 2
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