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Comment: Comment: 10x Cellranger SN RNA-seq BAM file output looks off
2.1 years ago by rebeliscu ▴ 60
0
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0
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1.5k
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Comment: Comment: 10x Cellranger SN RNA-seq BAM file output looks off
2.1 years ago by rebeliscu ▴ 60
4
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6
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1.5k
views
10x Cellranger SN RNA-seq BAM file output looks off
cellranger samtools star bam rna-seq
updated 2.1 years ago by 45k • written 2.1 years ago by ▴ 60
0
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0
replies
911
views
Comment: Comment: Variant caller reports a homozygous variant genotype, but more reads are associa
2.1 years ago by rebeliscu ▴ 60
2
votes
2
replies
911
views
Variant caller reports a homozygous variant genotype, but more reads are associated with reference
bcftools
updated 22 months ago by 45k • written 2.1 years ago by ▴ 60
1
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1
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1.3k
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BCFtools for somatic vs. germline variant calling
germline-variant bcftools somatic-variant RNA-seq
updated 2.1 years ago by 45k • written 2.1 years ago by ▴ 60
0
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1
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1.3k
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Comment: Comment: How to normalize and batch correct SC RNA-seq data from multiple libraries and c
3.2 years ago by rebeliscu ▴ 60
0
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3
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1.3k
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How to normalize and batch correct SC RNA-seq data from multiple libraries and confounded with biological differences
batch RNA-seq normalization preprocessing single-cell
updated 3.2 years ago by 4.7k • written 3.2 years ago by ▴ 60
0
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0
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928
views
Comment: Comment: Ensembl variant consequences and classification info in table format
3.5 years ago by rebeliscu ▴ 60
0
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2
replies
928
views
Ensembl variant consequences and classification info in table format
SO Ensembl API
3.5 years ago by rebeliscu ▴ 60
0
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0
replies
775
views
VEP: "Given ref" field is empty when a ref. allele was in VCF input
WXS VCF VEP
3.5 years ago by rebeliscu ▴ 60
1
vote
0
replies
872
views
Qualimap whole exome sequencing depth of coverage - use whole genome or exome as reference?
coverage wxs qualimap depth
3.5 years ago by rebeliscu ▴ 60
1
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0
replies
4.6k
views
Comment: Comment: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
3.5 years ago by rebeliscu ▴ 60
0
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1
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4.6k
views
Comment: Comment: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
3.5 years ago by rebeliscu ▴ 60
11
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8
replies
4.6k
views
Base recalibration in normal vs. tumor somatic variant calling in WXS data?
WXS recalibration variant somatic
updated 20 months ago by ▴ 70 • written 3.5 years ago by ▴ 60
0
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1
reply
4.6k
views
Comment: Comment: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
3.5 years ago by rebeliscu ▴ 60
0
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1
reply
1.0k
views
Comment: Comment: Exome sequencing one sample on two lanes considered two read groups for marking
3.5 years ago by rebeliscu ▴ 60
0
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3
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1.0k
views
Exome sequencing one sample on two lanes considered two read groups for marking of PCR duplicates?
deduplication read groups exome sequencing
updated 3.5 years ago by 151k • written 3.5 years ago by ▴ 60
0
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0
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3.2k
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Comment: Comment: BBDuk quality filtering not producing expected results
3.5 years ago by rebeliscu ▴ 60
0
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1
reply
3.2k
views
Comment: Comment: BBDuk quality filtering not producing expected results
3.5 years ago by rebeliscu ▴ 60
0
votes
1
reply
3.2k
views
Comment: Comment: BBDuk quality filtering not producing expected results
3.5 years ago by rebeliscu ▴ 60
2
votes
8
replies
3.2k
views
BBDuk quality filtering not producing expected results
filtering trimming QC BBDuk quality
updated 3.5 years ago by 35k • written 3.5 years ago by ▴ 60
0
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1
reply
3.2k
views
Comment: Comment: BBDuk quality filtering not producing expected results
3.5 years ago by rebeliscu ▴ 60
0
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0
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541
views
TCGA Agilent level 2 to level 3
TCGA
3.7 years ago by rebeliscu ▴ 60
0
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0
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1.7k
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Comment: Comment: GDC RNA-seq pipeline: Original vs. Dr15plus?
3.7 years ago by rebeliscu ▴ 60
2
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3
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1.7k
views
GDC RNA-seq pipeline: Original vs. Dr15plus?
RNA-seq GDC
updated 3.7 years ago by ★ 1.3k • written 3.7 years ago by ▴ 60
0
votes
1
reply
58k
views
Comment: Comment: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Ge
4.0 years ago by rebeliscu ▴ 60
0
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0
replies
704
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Where to find TCGA hg38 WXS coverage per sample
TCGA WXS coverage
4.0 years ago by rebeliscu ▴ 60
1
vote
2
replies
5.9k
views
fastq.gz unexpected end of file: Can this be fixed?
corrup fastq
updated 4.0 years ago by 151k • written 4.0 years ago by ▴ 60
1
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2
replies
2.0k
views
Where to install latest Affymetrix Power Tools?
affymetrix
updated 4.0 years ago by 151k • written 4.0 years ago by ▴ 60
0
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0
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1.8k
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Comment: C: RNA-seq data: Contradictory counts vs. variance/dispersion trend?
4.7 years ago by rebeliscu ▴ 60
1
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2
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1.8k
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RNA-seq data: Contradictory counts vs. variance/dispersion trend?
RNA-Seq rna-seq
updated 4.7 years ago by 89k • written 4.7 years ago by ▴ 60
0
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1
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2.4k
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Comment: A: Small dispersion values in differential expression analysis
4.7 years ago by rebeliscu ▴ 60
0
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0
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1.1k
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"Manual" enrichment analysis of gene set for genes associated with cell types
RNA-Seq deseq2 gene enrichment analysis gsea
6.1 years ago by rebeliscu ▴ 60
0
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0
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3.9k
views
Comment: Comment: WGCNA for less than 15 samples
updated 2.6 years ago by 45k • written 6.2 years ago by ▴ 60
35 results • Page 1 of 1
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