Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
1.2k
views
Comment: Comment: 10x Cellranger SN RNA-seq BAM file output looks off
20 months ago by rebeliscu ▴ 60
0
votes
0
replies
1.2k
views
Comment: Comment: 10x Cellranger SN RNA-seq BAM file output looks off
20 months ago by rebeliscu ▴ 60
4
votes
6
replies
1.2k
views
10x Cellranger SN RNA-seq BAM file output looks off
cellranger samtools star bam rna-seq
updated 20 months ago by 44k • written 20 months ago by ▴ 60
0
votes
0
replies
756
views
Comment: Comment: Variant caller reports a homozygous variant genotype, but more reads are associa
20 months ago by rebeliscu ▴ 60
2
votes
2
replies
756
views
Variant caller reports a homozygous variant genotype, but more reads are associated with reference
bcftools
updated 17 months ago by 44k • written 20 months ago by ▴ 60
1
vote
1
reply
1.1k
views
BCFtools for somatic vs. germline variant calling
germline-variant bcftools somatic-variant RNA-seq
updated 20 months ago by 44k • written 20 months ago by ▴ 60
0
votes
1
reply
1.1k
views
Comment: Comment: How to normalize and batch correct SC RNA-seq data from multiple libraries and c
2.7 years ago by rebeliscu ▴ 60
0
votes
3
replies
1.1k
views
How to normalize and batch correct SC RNA-seq data from multiple libraries and confounded with biological differences
batch RNA-seq normalization preprocessing single-cell
updated 2.7 years ago by 4.5k • written 2.7 years ago by ▴ 60
0
votes
0
replies
789
views
Comment: Comment: Ensembl variant consequences and classification info in table format
3.1 years ago by rebeliscu ▴ 60
0
votes
2
replies
789
views
Ensembl variant consequences and classification info in table format
SO Ensembl API
3.1 years ago by rebeliscu ▴ 60
0
votes
0
replies
689
views
VEP: "Given ref" field is empty when a ref. allele was in VCF input
WXS VCF VEP
3.1 years ago by rebeliscu ▴ 60
1
vote
0
replies
792
views
Qualimap whole exome sequencing depth of coverage - use whole genome or exome as reference?
coverage wxs qualimap depth
3.1 years ago by rebeliscu ▴ 60
1
vote
0
replies
3.8k
views
Comment: Comment: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
3.1 years ago by rebeliscu ▴ 60
0
votes
1
reply
3.8k
views
Comment: Comment: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
3.1 years ago by rebeliscu ▴ 60
11
votes
8
replies
3.8k
views
Base recalibration in normal vs. tumor somatic variant calling in WXS data?
WXS recalibration variant somatic
updated 15 months ago by ▴ 70 • written 3.1 years ago by ▴ 60
0
votes
1
reply
3.8k
views
Comment: Comment: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
3.1 years ago by rebeliscu ▴ 60
0
votes
1
reply
889
views
Comment: Comment: Exome sequencing one sample on two lanes considered two read groups for marking
3.1 years ago by rebeliscu ▴ 60
0
votes
3
replies
889
views
Exome sequencing one sample on two lanes considered two read groups for marking of PCR duplicates?
deduplication read groups exome sequencing
updated 3.1 years ago by 147k • written 3.1 years ago by ▴ 60
0
votes
0
replies
2.8k
views
Comment: Comment: BBDuk quality filtering not producing expected results
3.1 years ago by rebeliscu ▴ 60
0
votes
1
reply
2.8k
views
Comment: Comment: BBDuk quality filtering not producing expected results
3.1 years ago by rebeliscu ▴ 60
0
votes
1
reply
2.8k
views
Comment: Comment: BBDuk quality filtering not producing expected results
3.1 years ago by rebeliscu ▴ 60
2
votes
8
replies
2.8k
views
BBDuk quality filtering not producing expected results
filtering trimming QC BBDuk quality
updated 3.1 years ago by 35k • written 3.1 years ago by ▴ 60
0
votes
1
reply
2.8k
views
Comment: Comment: BBDuk quality filtering not producing expected results
3.1 years ago by rebeliscu ▴ 60
0
votes
0
replies
482
views
TCGA Agilent level 2 to level 3
TCGA
3.3 years ago by rebeliscu ▴ 60
0
votes
0
replies
1.5k
views
Comment: Comment: GDC RNA-seq pipeline: Original vs. Dr15plus?
3.3 years ago by rebeliscu ▴ 60
2
votes
3
replies
1.5k
views
GDC RNA-seq pipeline: Original vs. Dr15plus?
RNA-seq GDC
updated 3.3 years ago by ★ 1.2k • written 3.3 years ago by ▴ 60
0
votes
1
reply
56k
views
Comment: Comment: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Ge
3.5 years ago by rebeliscu ▴ 60
0
votes
0
replies
604
views
Where to find TCGA hg38 WXS coverage per sample
TCGA WXS coverage
3.5 years ago by rebeliscu ▴ 60
1
vote
2
replies
5.5k
views
fastq.gz unexpected end of file: Can this be fixed?
corrup fastq
updated 3.5 years ago by 147k • written 3.5 years ago by ▴ 60
1
vote
2
replies
1.8k
views
Where to install latest Affymetrix Power Tools?
affymetrix
updated 3.6 years ago by 147k • written 3.6 years ago by ▴ 60
0
votes
0
replies
1.6k
views
Comment: C: RNA-seq data: Contradictory counts vs. variance/dispersion trend?
4.3 years ago by rebeliscu ▴ 60
1
vote
2
replies
1.6k
views
RNA-seq data: Contradictory counts vs. variance/dispersion trend?
RNA-Seq rna-seq
updated 4.3 years ago by 88k • written 4.3 years ago by ▴ 60
0
votes
1
reply
2.3k
views
Comment: A: Small dispersion values in differential expression analysis
4.3 years ago by rebeliscu ▴ 60
0
votes
0
replies
1.0k
views
"Manual" enrichment analysis of gene set for genes associated with cell types
RNA-Seq deseq2 gene enrichment analysis gsea
5.7 years ago by rebeliscu ▴ 60
0
votes
0
replies
3.6k
views
Comment: Comment: WGCNA for less than 15 samples
updated 2.2 years ago by 44k • written 5.8 years ago by ▴ 60
35 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6