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Event- vs transcript-based approaches for analyzing alternative splicing
RNA-Seq
alternative splicing
rMATS
Salmon
4.6 years ago by
fmerkal
▴ 60
1
vote
0
replies
1.8k
views
Comment:
C: How to handle "-1" PSI value in splicing
4.6 years ago by
fmerkal
▴ 60
0
votes
1
reply
4.4k
views
Comment:
C: Counts table as edgeR input for differential gene expression
4.8 years ago by
fmerkal
▴ 60
2
votes
1
reply
1.1k
views
Regarding the use of Ensembl REST API for converting coordinates between assemblies
assembly
genome
alignment
RNA-Seq
updated 5.0 years ago by
Ben Moore
★ 2.4k • written 5.0 years ago by
fmerkal
▴ 60
0
votes
0
replies
1.1k
views
Interpreting liftOver output to extract orthologous exons between distantly related species.
rna-seq
R
genome
5.6 years ago by
fmerkal
▴ 60
3
votes
6
replies
4.5k
views
SAM to BAM conversion problem after HISAT2.
RNA-Seq
software error
rna-seq
updated 5.9 years ago by
eennadi
▴ 40 • written 5.9 years ago by
fmerkal
▴ 60
0
votes
1
reply
54k
views
Comment:
C: Gene Set Clustering based on Functional annotation (GeneSCF)
5.9 years ago by
fmerkal
▴ 60
0
votes
1
reply
54k
views
Comment:
C: Gene Set Clustering based on Functional annotation (GeneSCF)
5.9 years ago by
fmerkal
▴ 60
6
votes
7
replies
11k
views
(edgeR-related) DGElist error message 'Negative counts not allowed'.
RNA-Seq
rna-seq
software error
R
updated 5.9 years ago by
Gordon Smyth
★ 7.8k • written 5.9 years ago by
fmerkal
▴ 60
0
votes
0
replies
11k
views
Comment:
C: (edgeR-related) DGElist error message 'Negative counts not allowed'.
5.9 years ago by
fmerkal
▴ 60
0
votes
0
replies
11k
views
Comment:
C: (edgeR-related) DGElist error message 'Negative counts not allowed'.
5.9 years ago by
fmerkal
▴ 60
0
votes
1
reply
11k
views
Comment:
C: (edgeR-related) DGElist error message 'Negative counts not allowed'.
5.9 years ago by
fmerkal
▴ 60
3
votes
0
replies
4.5k
views
Answer:
C: SAM to BAM conversion problem after HISAT2.
5.9 years ago by
fmerkal
▴ 60
0
votes
1
reply
4.5k
views
Comment:
C: SAM to BAM conversion problem after HISAT2.
5.9 years ago by
fmerkal
▴ 60
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