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Comment: Comment: Appending a Poly-A Tail to a Reference Transcriptome
3 months ago by jon.klonowski ▴ 210
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1.6k
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Comment: Comment: Filter out overlapping deletions from a VCF file.
3 months ago by jon.klonowski ▴ 210
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0
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1.8k
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Comment: Comment: Problems with overlapping variants in a vcf file
3 months ago by jon.klonowski ▴ 210
2
votes
1
reply
383
views
Removing / Excluding / Collapsing Overlapping Indels
bcftools genome vcf genotyping gatk
3 months ago by jon.klonowski ▴ 210
0
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0
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383
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Comment: Comment: Removing / Excluding / Collapsing Overlapping Indels
3 months ago by jon.klonowski ▴ 210
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0
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1.6k
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Comment: Comment: GATK SelectVariants consider spanning/overlapping deletions as SNP
3 months ago by jon.klonowski ▴ 210
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0
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1.6k
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Comment: Comment: GATK SelectVariants consider spanning/overlapping deletions as SNP
3 months ago by jon.klonowski ▴ 210
3
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2
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395
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Appending a Poly-A Tail to a Reference Transcriptome
bowtie RNAseq ASE transcriptome alignment
updated 3 months ago by 147k • written 3 months ago by ▴ 210
0
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0
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1.8k
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Comment: Comment: bcftools norm resulting in '*' in alternate allele
3 months ago by jon.klonowski ▴ 210
0
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0
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749
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Comment: Comment: Why do I have * in my FASTA? g2gtools diploid
3 months ago by jon.klonowski ▴ 210
0
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0
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749
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Comment: Comment: Why do I have * in my FASTA?
3 months ago by jon.klonowski ▴ 210
0
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0
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749
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Comment: Comment: Why do I have * in my FASTA?
3 months ago by jon.klonowski ▴ 210
0
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0
replies
749
views
Comment: Comment: Why do I have * in my FASTA?
3 months ago by jon.klonowski ▴ 210
0
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1
reply
749
views
Comment: Comment: Why do I have * in my FASTA?
3 months ago by jon.klonowski ▴ 210
0
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1
reply
749
views
Comment: Comment: Why do I have * in my FASTA?
3 months ago by jon.klonowski ▴ 210
0
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0
replies
749
views
Comment: Comment: Why do I have * in my FASTA?
3 months ago by jon.klonowski ▴ 210
0
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11
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749
views
Why do I have * in my FASTA? g2gtools diploid
g2gtools RNAseq FASTA genome transcriptome
3 months ago by jon.klonowski ▴ 210
0
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0
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6.0k
views
Answer: Answer: How to obtain distinct/uniqe rows from GenomicRanges object
11 months ago by jon.klonowski ▴ 210
0
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0
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6.0k
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Comment: Comment: How to obtain distinct/uniqe rows from GenomicRanges object
11 months ago by jon.klonowski ▴ 210
0
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0
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862
views
Comment: Comment: Mapping Mutations, Protein Domains, Exon structure on a Protein Figure/Visualiza
12 months ago by jon.klonowski ▴ 210
1
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3
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862
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Mapping Mutations, Protein Domains, Exon structure on a Protein Figure/Visualization with annoations
mutation protein domain structure
12 months ago by jon.klonowski ▴ 210
0
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0
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1.3k
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Comment: Comment: Sample Level Filtering During GATK Germline Short Variant Discovery
20 months ago by jon.klonowski ▴ 210
2
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3
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1.3k
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Sample Level Filtering During GATK Germline Short Variant Discovery
Genotyping genomics vcf GATK germline
20 months ago by jon.klonowski ▴ 210
1
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0
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4.0k
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Comment: Comment: bcftools query add header
22 months ago by jon.klonowski ▴ 210
0
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1
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923
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Comment: Comment: Purpose of Seqinfo Circularity Attribute in GenomicRanges Objects
23 months ago by jon.klonowski ▴ 210
4
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4
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923
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Purpose of Seqinfo Circularity Attribute in GenomicRanges Objects
Seqinfo GenomeInfoDb Circularity GenomicRanges
updated 23 months ago by 11k • written 23 months ago by ▴ 210
1
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1
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29k
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Answer: Answer: Best way to query VCF for specific variants
2.1 years ago by jon.klonowski ▴ 210
0
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0
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2.4k
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Comment: Comment: biomaRt: Timeout on getBM().
2.4 years ago by jon.klonowski ▴ 210
4
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5
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2.4k
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biomaRt: Timeout on getBM().
ensembl biomart
2.4 years ago by jon.klonowski ▴ 210
0
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1
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2.4k
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Comment: Comment: biomaRt: Timeout on getBM().
2.4 years ago by jon.klonowski ▴ 210
1
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0
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11k
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Comment: Comment: biomaRt: Timeout on getBM().
2.4 years ago by jon.klonowski ▴ 210
0
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0
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1.0k
views
VEP verisoning and GRCh37 vs GRCh38. conda/mamba/anaconda
ensembl genomics VEP GRCh37 conda
2.6 years ago by jon.klonowski ▴ 210
0
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0
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2.0k
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Comment: Comment: Installing VEP in conda
2.6 years ago by jon.klonowski ▴ 210
4
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5
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1.7k
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How to choose output when using a "By" function from a TxDb object; GenomicFeatures R
TxDb GenomicFeatures genomics R
2.8 years ago by jon.klonowski ▴ 210
3
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0
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1.7k
views
Answer: Answer: How to choose output when using a "By" function from a TxDb object; GenomicFeatu
2.8 years ago by jon.klonowski ▴ 210
0
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1
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1.7k
views
Comment: Comment: How to choose output when using a "By" function from a TxDb object; GenomicFeatu
2.8 years ago by jon.klonowski ▴ 210
0
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0
replies
584
views
How to check for the most recent EnsDb Hsapiens verison?
genomics ensembl ensdb ensembldb
2.8 years ago by jon.klonowski ▴ 210
0
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0
replies
1.1k
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Comment: Comment: Command line VEP "Amino_acid" Output Column Inturperation: AA / AA * AA
2.9 years ago by jon.klonowski ▴ 210
2
votes
3
replies
1.1k
views
Command line VEP "Amino_acid" Output Column Inturperation: AA / AA * AA
VEP ensembl genetics genomics annotation
2.9 years ago by jon.klonowski ▴ 210
0
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0
replies
2.4k
views
Comment: Comment: How do I split a genomicrange on chromosome and strand?
2.9 years ago by jon.klonowski ▴ 210
0
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0
replies
1.1k
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Comment: Comment: how do you get an IN-FRAME deletion stop gain variant?
3.0 years ago by jon.klonowski ▴ 210
1
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3
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1.1k
views
how do you get an IN-FRAME deletion stop gain variant?
genomics annotation ensembl VEP genetics
3.0 years ago by jon.klonowski ▴ 210
1
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1
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1.1k
views
Answer: Answer: how do you get an IN-FRAME deletion stop gain variant?
3.0 years ago by jon.klonowski ▴ 210
0
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0
replies
736
views
What is a good Standardized Beta/standardized regression coefficient in a genetics study?
regression genetics genomics
updated 20 months ago by 44k • written 3.3 years ago by ▴ 210
0
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0
replies
18k
views
Comment: Comment: Pararellization in GATK 4
3.5 years ago by jon.klonowski ▴ 210
0
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1
reply
1.3k
views
gnomAD AF = 0 vs gnomAD AF = NA (gnomad V2)
annontation rare genomics variant gnomad
3.6 years ago by jon.klonowski ▴ 210
0
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0
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1.3k
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Answer: Answer: gnomAD AF = 0 vs gnomAD AF = NA (gnomad V2)
3.6 years ago by jon.klonowski ▴ 210
1
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0
replies
1.3k
views
Answer: Answer: Merged Reference Panel using WES data
3.6 years ago by jon.klonowski ▴ 210
0
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0
replies
1.3k
views
Comment: Comment: gnomAD reports variants with "NA" allele count and allele frequency
3.6 years ago by jon.klonowski ▴ 210
0
votes
0
replies
820
views
UCSC parameters for converting between human genome builds
genomics bed ucsc genotyping
3.6 years ago by jon.klonowski ▴ 210
78 results • Page 1 of 2
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