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Comment: Comment: Appending a Poly-A Tail to a Reference Transcriptome
10 months ago by jon.klonowski ▴ 210
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0
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2.2k
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Comment: Comment: Filter out overlapping deletions from a VCF file.
10 months ago by jon.klonowski ▴ 210
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0
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2.1k
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Comment: Comment: Problems with overlapping variants in a vcf file
10 months ago by jon.klonowski ▴ 210
2
votes
1
reply
632
views
Removing / Excluding / Collapsing Overlapping Indels
bcftools genome vcf genotyping gatk
10 months ago by jon.klonowski ▴ 210
0
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0
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632
views
Comment: Comment: Removing / Excluding / Collapsing Overlapping Indels
10 months ago by jon.klonowski ▴ 210
0
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0
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2.0k
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Comment: Comment: GATK SelectVariants consider spanning/overlapping deletions as SNP
10 months ago by jon.klonowski ▴ 210
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0
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2.0k
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Comment: Comment: GATK SelectVariants consider spanning/overlapping deletions as SNP
10 months ago by jon.klonowski ▴ 210
3
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2
replies
700
views
Appending a Poly-A Tail to a Reference Transcriptome
bowtie RNAseq ASE transcriptome alignment
updated 10 months ago by 152k • written 10 months ago by ▴ 210
0
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0
replies
2.2k
views
Comment: Comment: bcftools norm resulting in '*' in alternate allele
10 months ago by jon.klonowski ▴ 210
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0
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1.4k
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Comment: Comment: Why do I have * in my FASTA? g2gtools diploid
10 months ago by jon.klonowski ▴ 210
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0
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1.4k
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Comment: Comment: Why do I have * in my FASTA?
10 months ago by jon.klonowski ▴ 210
0
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0
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1.4k
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Comment: Comment: Why do I have * in my FASTA?
10 months ago by jon.klonowski ▴ 210
0
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0
replies
1.4k
views
Comment: Comment: Why do I have * in my FASTA?
10 months ago by jon.klonowski ▴ 210
0
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1
reply
1.4k
views
Comment: Comment: Why do I have * in my FASTA?
10 months ago by jon.klonowski ▴ 210
0
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1
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1.4k
views
Comment: Comment: Why do I have * in my FASTA?
10 months ago by jon.klonowski ▴ 210
0
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0
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1.4k
views
Comment: Comment: Why do I have * in my FASTA?
10 months ago by jon.klonowski ▴ 210
0
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11
replies
1.4k
views
Why do I have * in my FASTA? g2gtools diploid
g2gtools RNAseq FASTA genome transcriptome
10 months ago by jon.klonowski ▴ 210
0
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0
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6.7k
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Answer: Answer: How to obtain distinct/uniqe rows from GenomicRanges object
18 months ago by jon.klonowski ▴ 210
0
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0
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6.7k
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Comment: Comment: How to obtain distinct/uniqe rows from GenomicRanges object
18 months ago by jon.klonowski ▴ 210
0
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0
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1.1k
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Comment: Comment: Mapping Mutations, Protein Domains, Exon structure on a Protein Figure/Visualiza
19 months ago by jon.klonowski ▴ 210
1
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3
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1.1k
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Mapping Mutations, Protein Domains, Exon structure on a Protein Figure/Visualization with annoations
mutation protein domain structure
19 months ago by jon.klonowski ▴ 210
0
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0
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1.7k
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Comment: Comment: Sample Level Filtering During GATK Germline Short Variant Discovery
2.3 years ago by jon.klonowski ▴ 210
2
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3
replies
1.7k
views
Sample Level Filtering During GATK Germline Short Variant Discovery
Genotyping genomics vcf GATK germline
2.3 years ago by jon.klonowski ▴ 210
1
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0
replies
5.2k
views
Comment: Comment: bcftools query add header
updated 5 weeks ago by 152k • written 2.4 years ago by ▴ 210
0
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1
reply
1.2k
views
Comment: Comment: Purpose of Seqinfo Circularity Attribute in GenomicRanges Objects
2.5 years ago by jon.klonowski ▴ 210
4
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4
replies
1.2k
views
Purpose of Seqinfo Circularity Attribute in GenomicRanges Objects
Seqinfo GenomeInfoDb Circularity GenomicRanges
updated 2.5 years ago by 11k • written 2.5 years ago by ▴ 210
1
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1
reply
32k
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Answer: Answer: Best way to query VCF for specific variants
2.7 years ago by jon.klonowski ▴ 210
0
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0
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3.0k
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Comment: Comment: biomaRt: Timeout on getBM().
3.0 years ago by jon.klonowski ▴ 210
4
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5
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3.0k
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biomaRt: Timeout on getBM().
ensembl biomart
3.0 years ago by jon.klonowski ▴ 210
0
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1
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3.0k
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Comment: Comment: biomaRt: Timeout on getBM().
3.0 years ago by jon.klonowski ▴ 210
1
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0
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13k
views
Comment: Comment: biomaRt: Timeout on getBM().
3.0 years ago by jon.klonowski ▴ 210
0
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0
replies
1.3k
views
VEP verisoning and GRCh37 vs GRCh38. conda/mamba/anaconda
ensembl genomics VEP GRCh37 conda
3.1 years ago by jon.klonowski ▴ 210
0
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0
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2.3k
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Comment: Comment: Installing VEP in conda
3.1 years ago by jon.klonowski ▴ 210
4
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5
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1.9k
views
How to choose output when using a "By" function from a TxDb object; GenomicFeatures R
TxDb GenomicFeatures genomics R
3.4 years ago by jon.klonowski ▴ 210
3
votes
0
replies
1.9k
views
Answer: Answer: How to choose output when using a "By" function from a TxDb object; GenomicFeatu
3.4 years ago by jon.klonowski ▴ 210
0
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1
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1.9k
views
Comment: Comment: How to choose output when using a "By" function from a TxDb object; GenomicFeatu
3.4 years ago by jon.klonowski ▴ 210
0
votes
0
replies
695
views
How to check for the most recent EnsDb Hsapiens verison?
genomics ensembl ensdb ensembldb
3.4 years ago by jon.klonowski ▴ 210
0
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0
replies
1.4k
views
Comment: Comment: Command line VEP "Amino_acid" Output Column Inturperation: AA / AA * AA
3.4 years ago by jon.klonowski ▴ 210
2
votes
3
replies
1.4k
views
Command line VEP "Amino_acid" Output Column Inturperation: AA / AA * AA
VEP ensembl genetics genomics annotation
3.4 years ago by jon.klonowski ▴ 210
0
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0
replies
2.7k
views
Comment: Comment: How do I split a genomicrange on chromosome and strand?
3.5 years ago by jon.klonowski ▴ 210
0
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0
replies
1.4k
views
Comment: Comment: how do you get an IN-FRAME deletion stop gain variant?
3.5 years ago by jon.klonowski ▴ 210
1
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3
replies
1.4k
views
how do you get an IN-FRAME deletion stop gain variant?
genomics annotation ensembl VEP genetics
3.5 years ago by jon.klonowski ▴ 210
1
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1
reply
1.4k
views
Answer: Answer: how do you get an IN-FRAME deletion stop gain variant?
3.5 years ago by jon.klonowski ▴ 210
0
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0
replies
898
views
What is a good Standardized Beta/standardized regression coefficient in a genetics study?
regression genetics genomics
updated 2.2 years ago by 45k • written 3.8 years ago by ▴ 210
0
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0
replies
20k
views
Comment: Comment: Pararellization in GATK 4
4.0 years ago by jon.klonowski ▴ 210
0
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1
reply
1.5k
views
gnomAD AF = 0 vs gnomAD AF = NA (gnomad V2)
annontation rare genomics variant gnomad
4.1 years ago by jon.klonowski ▴ 210
0
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0
replies
1.5k
views
Answer: Answer: gnomAD AF = 0 vs gnomAD AF = NA (gnomad V2)
4.1 years ago by jon.klonowski ▴ 210
1
vote
0
replies
1.6k
views
Answer: Answer: Merged Reference Panel using WES data
4.1 years ago by jon.klonowski ▴ 210
0
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0
replies
1.4k
views
Comment: Comment: gnomAD reports variants with "NA" allele count and allele frequency
4.1 years ago by jon.klonowski ▴ 210
0
votes
0
replies
912
views
UCSC parameters for converting between human genome builds
genomics bed ucsc genotyping
4.2 years ago by jon.klonowski ▴ 210
78 results • Page 1 of 2
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