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1000G Phase 3 GRCh38 liftover - EUR-nonFIN subset
1000Genomes
updated 22 months ago by 45k • written 4.0 years ago by ▴ 90
0
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0
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2.2k
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Comment: Comment: Negative heritability and filtering summary statistics
2.6 years ago by gokberk ▴ 90
0
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1
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1.1k
views
Comment: Comment: How can get significant results from the GWAS summary statistics results
3.4 years ago by gokberk ▴ 90
2
votes
1
reply
1.5k
views
Allele coding in BGENIE GWAS output
gwas bgenie summary statistics
updated 3.4 years ago by ▴ 40 • written 4.7 years ago by ▴ 90
0
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0
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1.8k
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Comment: Comment: Miropeats download issue
3.5 years ago by gokberk ▴ 90
0
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1
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1.8k
views
Comment: Comment: Miropeats download issue
3.5 years ago by gokberk ▴ 90
0
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1
reply
1.8k
views
Comment: Comment: Miropeats download issue
3.5 years ago by gokberk ▴ 90
3
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7
replies
1.8k
views
Miropeats download issue
miropeats
3.5 years ago by gokberk ▴ 90
0
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1
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1.8k
views
Comment: Comment: Miropeats download issue
3.5 years ago by gokberk ▴ 90
0
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0
replies
2.3k
views
Comment: Comment: Ensembl phylogenetic context
3.6 years ago by gokberk ▴ 90
0
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1
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2.3k
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Comment: Comment: Ensembl phylogenetic context
3.6 years ago by gokberk ▴ 90
0
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0
replies
2.3k
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Comment: Comment: Ensembl phylogenetic context
3.6 years ago by gokberk ▴ 90
0
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1
reply
2.3k
views
Comment: Comment: Ensembl phylogenetic context
3.6 years ago by gokberk ▴ 90
0
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0
replies
2.3k
views
Comment: Comment: Ensembl phylogenetic context
3.6 years ago by gokberk ▴ 90
5
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8
replies
2.3k
views
Ensembl phylogenetic context
alignment ensembl phylogeny
3.6 years ago by gokberk ▴ 90
0
votes
0
replies
654
views
Intersecting phyloP bed and per-base bed files
format bedtools bed
3.7 years ago by gokberk ▴ 90
0
votes
0
replies
605
views
"significantly different" heritability
statistics heritability
4.0 years ago by gokberk ▴ 90
0
votes
0
replies
741
views
MAF and LD matching SNP list
variants snpsnap control
4.0 years ago by gokberk ▴ 90
1
vote
1
reply
1.8k
views
Answer: Answer: 1000G Phase 3 GRCh38 liftover - EUR-nonFIN subset
4.0 years ago by gokberk ▴ 90
2
votes
2
replies
1.2k
views
SNP count in a set of genomic regions
annotations SNPs 1000G
updated 4.0 years ago by 14k • written 4.0 years ago by ▴ 90
3
votes
3
replies
2.2k
views
Negative heritability and filtering summary statistics
ldsc partitioned heritability
2.6 years ago by gokberk ▴ 90
2
votes
1
reply
2.2k
views
Answer: Answer: Negative heritability and filtering summary statistics
4.0 years ago by gokberk ▴ 90
0
votes
0
replies
1.1k
views
One-sided test with LDSC --h2 flag and custom annotations
heritability ldsc partitioned
4.1 years ago by gokberk ▴ 90
5
votes
4
replies
8.4k
views
Long-read alignment with Minimap2
minimap2 long-read DNA-seq
updated 5.1 years ago by 20 • written 5.9 years ago by ▴ 90
0
votes
1
reply
927
views
HiSAT2 edit distance option
rna-seq hisat2
updated 5.2 years ago by • 0 • written 5.9 years ago by ▴ 90
5
votes
4
replies
4.0k
views
Extracting uniquely mapped reads from bams
rna-seq hisat2
updated 5.8 years ago by 20 • written 5.9 years ago by ▴ 90
0
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0
replies
1.7k
views
Comment: C: Phylogenetic tree construction from small sized SNP data
5.8 years ago by gokberk ▴ 90
2
votes
2
replies
1.7k
views
Phylogenetic tree construction from small sized SNP data
phylogenetic tree SNP SNPhyl
updated 5.8 years ago by 8.8k • written 5.8 years ago by ▴ 90
0
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0
replies
1.4k
views
Comment: C: Missing variants in hg38 lift-over of 1000-genomes data
5.8 years ago by gokberk ▴ 90
2
votes
2
replies
1.4k
views
Missing variants in hg38 lift-over of 1000-genomes data
1000genomes vcf
5.8 years ago by gokberk ▴ 90
1
vote
0
replies
1.7k
views
Comment: C: Extracting super-population allele frequencies from 1000 genomes (phase 3) data
5.8 years ago by gokberk ▴ 90
4
votes
2
replies
1.7k
views
Extracting super-population allele frequencies from 1000 genomes (phase 3) data
vcf 1000genomes
5.8 years ago by gokberk ▴ 90
0
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1
reply
8.4k
views
Comment: C: Long-read alignment with Minimap2
5.9 years ago by gokberk ▴ 90
2
votes
0
replies
8.4k
views
Answer: A: Long-read alignment with Minimap2
5.9 years ago by gokberk ▴ 90
0
votes
1
reply
4.0k
views
Comment: C: Extracting uniquely mapped reads from bams
5.9 years ago by gokberk ▴ 90
3
votes
1
reply
999
views
Unexpected characters at consensus fasta generated by mpileup
samtools mpileup consensussequence
5.9 years ago by gokberk ▴ 90
0
votes
1
reply
2.6k
views
Comment: C: featureCounts - annotation file issue
6.0 years ago by gokberk ▴ 90
4
votes
3
replies
2.6k
views
featureCounts - annotation file issue
RNA-Seq
6.0 years ago by gokberk ▴ 90
0
votes
0
replies
2.0k
views
Comment: C: Subread alignment issue
6.0 years ago by gokberk ▴ 90
0
votes
4
replies
2.0k
views
Subread alignment issue
rna-seq
6.0 years ago by gokberk ▴ 90
0
votes
0
replies
1.5k
views
Comment: C: Generating count table
6.0 years ago by gokberk ▴ 90
6
votes
2
replies
1.5k
views
Generating count table
RNA-Seq
6.0 years ago by gokberk ▴ 90
2
votes
1
reply
2.5k
views
Annotation problem while using Rsubread
annotation gtf gff
6.0 years ago by gokberk ▴ 90
5
votes
4
replies
1.5k
views
Browsing mappings for multiple BAM files
RNA-Seq
updated 6.1 years ago by ▴ 40 • written 6.1 years ago by ▴ 90
0
votes
0
replies
1.5k
views
Comment: C: Browsing mappings for multiple BAM files
6.1 years ago by gokberk ▴ 90
0
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1
reply
2.6k
views
Comment: C: TopHat mapping error
6.1 years ago by gokberk ▴ 90
0
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0
replies
2.6k
views
Comment: C: TopHat mapping error
6.1 years ago by gokberk ▴ 90
0
votes
2
replies
2.6k
views
Comment: C: TopHat mapping error
6.1 years ago by gokberk ▴ 90
0
votes
1
reply
2.6k
views
Comment: C: TopHat mapping error
6.1 years ago by gokberk ▴ 90
0
votes
0
replies
2.6k
views
Comment: C: TopHat mapping error
6.1 years ago by gokberk ▴ 90
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