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how to prepare NGS analysis environment by Docker
Docker NGS RNASeq
updated 2.3 years ago by 85k • written 2.3 years ago by ▴ 120
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0
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1.3k
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Comment: Comment: how to detect non CpG methylation probes ?
3.4 years ago by takoyaki ▴ 120
3
votes
3
replies
4.6k
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How to connect htseq-count to DESeq2?
R RNA-Seq next-gen DEG Mapping
updated 3.4 years ago by ▴ 50 • written 5.3 years ago by ▴ 120
0
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1
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1.3k
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Comment: Comment: how to detect non CpG methylation probes ?
3.4 years ago by takoyaki ▴ 120
3
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4
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1.3k
views
how to detect non CpG methylation probes ?
DNAmethylation methylation infinium450k microarray minfi R
3.4 years ago by takoyaki ▴ 120
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0
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2.3k
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Comment: Comment: Is number after "LOC" genes equal to its Entrez id ?
3.6 years ago by takoyaki ▴ 120
0
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0
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2.3k
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Comment: Comment: Is number after "LOC" genes equal to its Entrez id ?
3.6 years ago by takoyaki ▴ 120
0
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0
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2.3k
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Comment: Comment: Is number after "LOC" genes equal to its Entrez id ?
3.6 years ago by takoyaki ▴ 120
4
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6
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2.3k
views
Is number after "LOC" genes equal to its Entrez id ?
NCBI gene LOC
3.6 years ago by takoyaki ▴ 120
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1
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2.2k
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Comment: C: conda installation error in hypo
4.4 years ago by takoyaki ▴ 120
3
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3
replies
2.2k
views
conda installation error in hypo
anaconda sequencing assembly longread hypo
updated 4.4 years ago by 104k • written 4.4 years ago by ▴ 120
2
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0
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1.7k
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How to interpret DEGs of DESeq2 in comparing more than two groups?
DESeq2 DEGs RNA-Seq R
4.5 years ago by takoyaki ▴ 120
0
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0
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996
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Comment: C: How to extract FASTA file from header list ?
4.6 years ago by takoyaki ▴ 120
2
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2
replies
996
views
How to extract FASTA file from header list ?
next-gen sequence gene
updated 4.6 years ago by 85k • written 4.6 years ago by ▴ 120
2
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1
reply
1.5k
views
What is the difference of "scaffold" and "contig" in assembly ?
Assembly assembly genome
4.6 years ago by takoyaki ▴ 120
1
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1
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7.5k
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Comment: C: How to draw boxplot with each point and background color by R ?
4.7 years ago by takoyaki ▴ 120
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0
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7.5k
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Comment: C: How to draw boxplot with each point and background color by R ?
4.7 years ago by takoyaki ▴ 120
18
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13
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7.5k
views
How to draw boxplot with each point and background color by R ?
R RNA-Seq
updated 4.7 years ago by 88k • written 4.7 years ago by ▴ 120
0
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1
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7.5k
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Comment: C: How to draw boxplot with each point and background color by R ?
4.7 years ago by takoyaki ▴ 120
0
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1
reply
7.5k
views
Comment: C: How to draw boxplot with each point and background color by R ?
4.7 years ago by takoyaki ▴ 120
0
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0
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7.5k
views
Comment: C: How to draw boxplot with each point and background color by R ?
4.7 years ago by takoyaki ▴ 120
2
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1
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7.3k
views
Comment: C: Homer error "findMotifsGenome.pl" : Can't locate HomerConfig.pm in @INC
4.7 years ago by takoyaki ▴ 120
4
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5
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7.3k
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Homer error "findMotifsGenome.pl" : Can't locate HomerConfig.pm in @INC
ChIP-Seq next-gen sequence software error
updated 4.7 years ago by ★ 28k • written 4.7 years ago by ▴ 120
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0
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2.2k
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Comment: C: What is the difference between picard and picard-tools ?
4.8 years ago by takoyaki ▴ 120
3
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2
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2.2k
views
What is the difference between picard and picard-tools ?
genome PCR sequence next-gen
updated 4.8 years ago by 20k • written 4.8 years ago by ▴ 120
0
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0
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2.2k
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Comment: C: Which Normalization is good in RNA-Seq ? How normalization is calculated ?
5.2 years ago by takoyaki ▴ 120
0
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1
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2.2k
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Comment: C: Which Normalization is good in RNA-Seq ? How normalization is calculated ?
5.2 years ago by takoyaki ▴ 120
4
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6
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2.2k
views
Which Normalization is good in RNA-Seq ? How normalization is calculated ?
rna-seq RNA-Seq R
5.2 years ago by takoyaki ▴ 120
1
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0
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4.1k
views
Comment: C: How to adjust graphics co-scatter plot using R function "pairs.panels" in librar
5.2 years ago by takoyaki ▴ 120
1
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2
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4.1k
views
How to adjust graphics co-scatter plot using R function "pairs.panels" in library "psych" ?
R graph rna-seq
updated 5.2 years ago by 88k • written 5.2 years ago by ▴ 120
0
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0
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4.9k
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Comment: C: Error of featureCounts : /lib64/libc.so.6: version `GLIBC_2.14' not found (requ
5.3 years ago by takoyaki ▴ 120
0
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0
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4.9k
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Comment: C: Error of featureCounts : /lib64/libc.so.6: version `GLIBC_2.14' not found (requ
5.3 years ago by takoyaki ▴ 120
0
votes
9
replies
4.9k
views
Error of featureCounts : /lib64/libc.so.6: version `GLIBC_2.14' not found (required by featureCounts)
RNA-Seq software error next-gen
updated 5.3 years ago by ▴ 350 • written 5.3 years ago by ▴ 120
1
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0
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4.3k
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Comment: C: How to proccess Microarrays CEL file byR package "oligo" ?
5.3 years ago by takoyaki ▴ 120
5
votes
2
replies
4.3k
views
How to proccess Microarrays CEL file byR package "oligo" ?
R microarray software error
updated 5.3 years ago by 88k • written 5.3 years ago by ▴ 120
0
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0
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9.0k
views
Comment: C: How to install R packages that need dev program like RCurl, png, XML by conda ?
5.3 years ago by takoyaki ▴ 120
0
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1
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9.0k
views
Comment: C: How to install R packages that need dev program like RCurl, png, XML by conda ?
5.3 years ago by takoyaki ▴ 120
0
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0
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9.0k
views
Comment: C: How to install R packages that need dev program like RCurl, png, XML by conda ?
5.3 years ago by takoyaki ▴ 120
7
votes
7
replies
9.0k
views
How to install R packages that need dev program like RCurl, png, XML by conda ?
RNA-Seq R software error package
updated 5.3 years ago by ▴ 10 • written 5.3 years ago by ▴ 120
8
votes
5
replies
5.0k
views
How to use htseq-count with several samples ?
RNA-Seq next-gen gene
updated 3.0 years ago by ▴ 200 • written 5.4 years ago by ▴ 120
0
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1
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5.0k
views
Comment: C: How to use htseq-count with several samples ?
5.4 years ago by takoyaki ▴ 120
0
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0
replies
3.2k
views
Comment: C: How to draw gene expression heatmap ?
5.4 years ago by takoyaki ▴ 120
1
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0
replies
3.2k
views
Comment: C: How to draw gene expression heatmap ?
5.4 years ago by takoyaki ▴ 120
3
votes
4
replies
3.2k
views
How to draw gene expression heatmap ?
RNA-Seq gene next-gen R
updated 5.4 years ago by 88k • written 5.4 years ago by ▴ 120
5
votes
1
reply
1.3k
views
Mapping soft for de novo assembly
RNA-Seq Assembly Mapping
updated 5.4 years ago by 20 • written 5.5 years ago by ▴ 120
0
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0
replies
1.4k
views
Comment: C: How to edit signalp program like git hub ?
5.4 years ago by takoyaki ▴ 120
1
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2
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1.4k
views
How to edit signalp program like git hub ?
RNA-Seq software error alignment next-gen gene
updated 5.4 years ago by 7.0k • written 5.4 years ago by ▴ 120
2
votes
2
replies
1.5k
views
Standard value of quality score and sequence length in QC trimming of RNA-Seq
rna-seq next-gen sequencing
updated 5.5 years ago by ▴ 300 • written 5.5 years ago by ▴ 120
0
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0
replies
6.1k
views
Comment: C: clustal omega vs mafft
5.6 years ago by takoyaki ▴ 120
3
votes
2
replies
6.1k
views
clustal omega vs mafft
alignment sequence genome gene
5.6 years ago by takoyaki ▴ 120
52 results • Page 1 of 2
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