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How to remove variants with 3+ alleles present Plink1.9
HaplotypeCaller GATK Plink1.9 vcftools
updated 8 months ago by • 0 • written 2.8 years ago by ▴ 10
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2.5k
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Query regarding Intervals and interval lists (-L) for Target Enrichment Sequencing GATK HaplotypeCaller
Agilent Interval_list HaplotypeCaller target_enrichment_list GATK
2.7 years ago by ramshahaya ▴ 10
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0
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879
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Comment: Comment: identification of ROH using plink
2.7 years ago by ramshahaya ▴ 10
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0
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541
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Query reagrding Plink merging
vcf Plink1.9 GATK bcftools
updated 17 months ago by 44k • written 2.7 years ago by ▴ 10
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1.3k
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Comment: Comment: How to get information (Count) of Unique Mapped Reads to the Genome?
2.8 years ago by ramshahaya ▴ 10
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3.1k
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Comment: Comment: How to remove variants with 3+ alleles present Plink1.9
updated 2.8 years ago by 12k • written 2.8 years ago by ▴ 10
0
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1
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1.3k
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Comment: Comment: How to get information (Count) of Unique Mapped Reads to the Genome?
2.8 years ago by ramshahaya ▴ 10
0
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4
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1.3k
views
How to get information (Count) of Unique Mapped Reads to the Genome?
samtools BWA
2.8 years ago by ramshahaya ▴ 10
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0
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546
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Understand Bedtools coverage output
Bedtools coverage
updated 17 months ago by 44k • written 2.8 years ago by ▴ 10
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2.0k
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Comment: Comment: Haplotype Caller GATK Query
2.8 years ago by ramshahaya ▴ 10
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0
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2.0k
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Comment: Comment: Haplotype Caller GATK Query
2.8 years ago by ramshahaya ▴ 10
0
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1
reply
2.0k
views
Comment: Comment: Haplotype Caller GATK Query
2.8 years ago by ramshahaya ▴ 10
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0
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1.2k
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Comment: Comment: targeted resequencing data analysis
2.8 years ago by ramshahaya ▴ 10
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2
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2.0k
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Comment: Comment: Haplotype Caller GATK Query
updated 2.8 years ago by 164k • written 2.8 years ago by ▴ 10
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9
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2.0k
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Haplotype Caller GATK Query
Sequencing enrichment Target GATK-Haplotype-Caller
2.8 years ago by ramshahaya ▴ 10
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0
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1.1k
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Comment: Comment: SnpEff Query
2.8 years ago by ramshahaya ▴ 10
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1
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1.1k
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Comment: Comment: SnpEff Query
2.9 years ago by ramshahaya ▴ 10
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4
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1.1k
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SnpEff Query
snpeff GATK annotation
2.8 years ago by ramshahaya ▴ 10
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0
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4.0k
views
Answer: A: Picard - MergeBamAlignment: Reads remaining on alignment iterator
4.0 years ago by ramshahaya ▴ 10
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