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comments
8
votes
16
replies
5.7k
views
9 follow
visualize CNV data based on WGS
CNV
updated 8 months ago by
clealk
▴ 70 • written 6.9 years ago by
Bogdan
★ 1.4k
1
vote
0
replies
400
views
Forum:
list of bioinformatics tools in cancer genomics
mutations
CNA
cancer
genomics
LOH
updated 9 months ago by
Pierre Lindenbaum
164k • written 9 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
368
views
filtering SNV/INDEL in tumor-only WGS samples
Tumor-only
samples
12 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
695
views
filtering variants in a Strelka2 VCF file based on AD and AF
Filter
VCF
14 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
426
views
Copy Number Alteration and Loss or Heterozygosity
LOH
CNA
copy-number
updated 17 months ago by
Ram
44k • written 17 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
1.0k
views
Comment:
Comment: fitting a copy number profile to know CNV signatures
18 months ago by
Bogdan
★ 1.4k
2
votes
3
replies
1.0k
views
fitting a copy number profile to know CNV signatures
CNV
copy
number
LOH
CNA
updated 18 months ago by
LauferVA
4.5k • written 19 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
435
views
allelic copy number variation
LOH
CNA
CNV
copy-number
updated 19 months ago by
Ram
44k • written 19 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
446
views
alelle - specific CNA/LOH
cancer
CNV
genomics
LOH
CNA
20 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
371
views
network alignment and network regression
network
21 months ago by
Bogdan
★ 1.4k
1
vote
0
replies
576
views
CNA/LOH caller on WGS data and chromosomal instability index
CNA
CNV
23 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
642
views
downloading the VCF files of CCLE project (or cancer genomics WGS)
cancer
genomics
WGS
CCLE
VCF
23 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
459
views
packages to detect chromoanagenesis phenomena in germline or cancer genomes
ShatterProof
23 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
8.8k
views
Answer:
Answer: How does edgeR do ERCC spike-in normalization?
24 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
363
views
clustering of genome segments
cancer
genomics
epigenetics
2.0 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
888
views
Comment:
Comment: wig2bed and counting the reads in the peaks
2.1 years ago by
Bogdan
★ 1.4k
3
votes
2
replies
888
views
wig2bed and counting the reads in the peaks
bedtools
ChIP-seq
deeptools
bedops
updated 17 months ago by
Ram
44k • written 2.1 years ago by
Bogdan
★ 1.4k
2
votes
1
reply
1.4k
views
normalize and compare bigwig files
bigwig
updated 2.1 years ago by
Matthias Zepper
5.0k • written 2.1 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
799
views
calling peaks in ChIP-seq datasets from bedgraph files
ChIP-seq
MACS2
updated 2.2 years ago by
Marco Pannone
▴ 810 • written 2.2 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
2.2k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
2.2 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
2.2k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
2.2 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
2.2k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
2.2 years ago by
Bogdan
★ 1.4k
0
votes
2
replies
2.2k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
2.2 years ago by
Bogdan
★ 1.4k
0
votes
11
replies
2.2k
views
paired-end reads, idxstats, and samtools and grep
samtools
updated 2.2 years ago by
LauferVA
4.5k • written 2.2 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
2.2k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
2.2 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
2.3k
views
Comment:
Comment: converting bedgraph to bigwig by not using ucsc tools
2.2 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
2.3k
views
Comment:
Comment: converting bedgraph to bigwig by not using ucsc tools
2.2 years ago by
Bogdan
★ 1.4k
5
votes
8
replies
2.3k
views
converting bedgraph to bigwig by not using ucsc tools
bedgraph
bigwig
2.2 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
2.3k
views
Answer:
Answer: converting bedgraph to bigwig by not using ucsc tools
2.2 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
1.2k
views
Comment:
Comment: CWL and Arvados
2.3 years ago by
Bogdan
★ 1.4k
3
votes
3
replies
1.2k
views
CWL and Arvados
CWL
workflow
manager
2.3 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
739
views
SNV, CNA, SV
SV
CNA
SNV
updated 2.3 years ago by
LauferVA
4.5k • written 2.3 years ago by
Bogdan
★ 1.4k
2
votes
1
reply
531
views
extracting sequences from a bam file
bam
updated 2.3 years ago by
LChart
4.5k • written 2.3 years ago by
Bogdan
★ 1.4k
1
vote
3
replies
1.3k
views
comparisons between 2 ChIP-seq datasets
ChIP-seq
updated 2.5 years ago by
ATpoint
85k • written 2.5 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
1.3k
views
Comment:
Comment: comparisons between 2 ChIP-seq datasets
2.5 years ago by
Bogdan
★ 1.4k
4
votes
3
replies
1.7k
views
computing chromothripsis on cancer genomes
snp
cnv
sv
cancer
updated 2.5 years ago by
Thind amarinder
▴ 340 • written 6.3 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
1.7k
views
Comment:
Comment: saving png images and X11
2.5 years ago by
Bogdan
★ 1.4k
0
votes
2
replies
695
views
browser to visualize single cell data
scATAC-seq
updated 2.5 years ago by
lieven.sterck
15k • written 2.5 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
401
views
HIC databases
Hi-C
2.6 years ago by
Bogdan
★ 1.4k
2
votes
1
reply
724
views
scATAC-seq
scATAC-seq
2.6 years ago by
Bogdan
★ 1.4k
2
votes
0
replies
724
views
Answer:
Answer: scATAC-seq
2.6 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
482
views
ssvQC
ssvQC
2.7 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
1.7k
views
Comment:
Comment: saving png images and X11
2.7 years ago by
Bogdan
★ 1.4k
0
votes
5
replies
1.7k
views
saving png images and X11
scripting
saving
images
and
2.5 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
647
views
HOMER on AWS
HOMER
updated 6 months ago by
clairechung112
▴ 10 • written 2.8 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
734
views
compare the background levels in two chip-seq experiments
ChIPseq
updated 2.8 years ago by
seidel
11k • written 2.8 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
702
views
Comment:
Comment: interchromosomal interactions and 4C
2.8 years ago by
Bogdan
★ 1.4k
0
votes
2
replies
702
views
interchromosomal interactions and 4C
4C
2.8 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
972
views
Comment:
Comment: compare ChIP-seq datasets in two cell lines
2.8 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
972
views
Comment:
Comment: compare ChIP-seq datasets in two cell lines
2.8 years ago by
Bogdan
★ 1.4k
386 results • Page
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