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Comment: Comment: Am I accounting for replicates correctly in pseudobulk analysis?
10 days ago by Aspire ▴ 370
0
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3
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301
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Am I accounting for replicates correctly in pseudobulk analysis?
deseq2 single-cell pseudobulk
updated 10 days ago by 87k • written 10 days ago by ▴ 370
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0
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1.1k
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Comment: Comment: Seeking a tool for enrichment of a small list of ranked genes
3 months ago by Aspire ▴ 370
1
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1
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1.1k
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Comment: Comment: Seeking a tool for enrichment of a small list of ranked genes
4 months ago by Aspire ▴ 370
4
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11
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1.1k
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Seeking a tool for enrichment of a small list of ranked genes
enrichment
3 months ago by Aspire ▴ 370
0
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2
replies
1.1k
views
Comment: Comment: Seeking a tool for enrichment of a small list of ranked genes
4 months ago by Aspire ▴ 370
0
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1
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1.1k
views
Comment: Comment: Seeking a tool for enrichment of a small list of ranked genes
4 months ago by Aspire ▴ 370
0
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0
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514
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Comment: Comment: Time-series statistics for a small amount of genes
7 months ago by Aspire ▴ 370
1
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2
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514
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Time-series statistics for a small amount of genes
rna-seq time-series
7 months ago by Aspire ▴ 370
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0
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17k
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Comment: Comment: Enrichment Score Interpretation
7 months ago by Aspire ▴ 370
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0
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1.2k
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Comment: Comment: CIBERSORTx error (error in rep(2, size * length(cells) -1)) : invalid 'times' ar
7 months ago by Aspire ▴ 370
1
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1
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521
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Creating a signature matrix using CibersortX
CibersortX deconvolution
updated 7 months ago by ★ 18k • written 7 months ago by ▴ 370
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0
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489
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Comment: Comment: Change of cell proportions or differential expression?
7 months ago by Aspire ▴ 370
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0
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489
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Comment: Comment: Change of cell proportions or differential expression?
7 months ago by Aspire ▴ 370
0
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3
replies
489
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Change of cell proportions or differential expression?
deconvolution differential-expression
7 months ago by Aspire ▴ 370
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0
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1.2k
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Comment: Comment: Differential analysis of enrichment results
8 months ago by Aspire ▴ 370
3
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8
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1.2k
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Differential analysis of enrichment results
statistics enrichment
8 months ago by Aspire ▴ 370
0
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0
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1.2k
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Comment: Comment: Differential analysis of enrichment results
8 months ago by Aspire ▴ 370
0
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2
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1.2k
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Comment: Comment: Differential analysis of enrichment results
8 months ago by Aspire ▴ 370
0
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0
replies
1.8k
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Comment: Comment: Is it possible to run CibersortX with a very small number of samples?
10 months ago by Aspire ▴ 370
2
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4
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1.8k
views
Is it possible to run CibersortX with a very small number of samples?
cibersortx
10 months ago by Aspire ▴ 370
2
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1
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931
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Answer: Answer: p-value in CIBERSORT
updated 11 months ago by 45k • written 11 months ago by ▴ 370
1
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0
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512
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Comment: Comment: Adjust pvalue in R with different approach give me all different outcome
updated 11 months ago by 45k • written 11 months ago by ▴ 370
1
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0
replies
557
views
Why not use iBAQ for calculating differential abundance of proteins?
protein maxquant
11 months ago by Aspire ▴ 370
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0
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6.7k
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Comment: Comment: Error in CIBERSORTx
11 months ago by Aspire ▴ 370
4
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3
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727
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Demonstrating lack of difference between two peaksets
DiffBind ChIP-seq
updated 12 months ago by 4.6k • written 12 months ago by ▴ 370
10
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4
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957
views
6 follow
Doublechecking enrichment of promoters of DE genes
motifs enrichment
updated 15 months ago by 87k • written 15 months ago by ▴ 370
0
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1
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1.1k
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Comment: Comment: Consensus peaksets in DiffBind - conceptual questinos
15 months ago by Aspire ▴ 370
1
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3
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1.1k
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Consensus peaksets in DiffBind - conceptual questinos
DiffBind
updated 15 months ago by ★ 2.1k • written 15 months ago by ▴ 370
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0
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2.7k
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Comment: Comment: What statistical test to apply for DE after CibersortX deconvolution
18 months ago by Aspire ▴ 370
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1
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2.7k
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Comment: Comment: What statistical test to apply for DE after CibersortX deconvolution
22 months ago by Aspire ▴ 370
1
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5
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2.7k
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What statistical test to apply for DE after CibersortX deconvolution
cibersortx differential-expression t-test deconvolution
18 months ago by Aspire ▴ 370
0
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0
replies
1.2k
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Comment: Comment: Brain cell type deconvolution
23 months ago by Aspire ▴ 370
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1
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2.3k
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Comment: Comment: ERROR using CIBERSORTx Docker version
23 months ago by Aspire ▴ 370
1
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1
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638
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How to correctly apply -len/fragLength parameter in Homer's annotatePeaks.pl ?
homer
updated 2.4 years ago by 5.1k • written 2.4 years ago by ▴ 370
5
votes
2
replies
1.3k
views
How to avoid overfitting using SVA?
RNA-Seq sva overfitting
updated 2.8 years ago by 87k • written 4.5 years ago by ▴ 370
5
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3
replies
1.7k
views
How to interpret similar motifs in Homer results
Homer
updated 2.9 years ago by ★ 29k • written 2.9 years ago by ▴ 370
5
votes
2
replies
844
views
Why does DiffBind use the count of reads that fall within peaks?
DiffBind
updated 3.0 years ago by ★ 2.1k • written 3.0 years ago by ▴ 370
0
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0
replies
595
views
A question on Homer normalization
homer
updated 3.0 years ago by 87k • written 3.0 years ago by ▴ 370
2
votes
1
reply
850
views
What is the correct order of flooring-normalization-batch correction for microarrays ?
microarray
updated 3.1 years ago by ▴ 40 • written 3.1 years ago by ▴ 370
1
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0
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833
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Comment: Comment: DESeq2 to compare between samples
3.1 years ago by Aspire ▴ 370
0
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0
replies
480
views
Is there a public Yabi server available?
yabi
3.2 years ago by Aspire ▴ 370
0
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0
replies
555
views
How to perform gene set enrichment analysis on genes that contribute to a specific PC?
pca
updated 3.3 years ago by 87k • written 3.3 years ago by ▴ 370
0
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4
replies
1.6k
views
What is the precise range that Solexa quality scores can take?
phred solexa quality-score fastq
3.4 years ago by Aspire ▴ 370
0
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1
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1.6k
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Comment: Comment: What is the range that Solexa quality scores can take?
3.4 years ago by Aspire ▴ 370
0
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0
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2.2k
views
Comment: Comment: How to check which genes affect a continuous phenotype
3.5 years ago by Aspire ▴ 370
0
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1
reply
2.2k
views
Comment: Comment: How to check which genes affect a continuous phenotype
3.5 years ago by Aspire ▴ 370
0
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2
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2.2k
views
Comment: Comment: How to check which genes affect a continuous phenotype
3.6 years ago by Aspire ▴ 370
3
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3
replies
1.5k
views
What QC measures to look for when performing deconvolution?
QC CibersortX deconvolution
updated 3.3 years ago by ★ 9.6k • written 3.7 years ago by ▴ 370
1
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2
replies
1.5k
views
Comment: Comment: What QC measures to look for when performing deconvolution?
3.7 years ago by Aspire ▴ 370
153 results • Page 1 of 4
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