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Comment: Comment: Seeking a tool for enrichment of a small list of ranked genes
21 days ago by Aspire ▴ 370
1
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1
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765
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Comment: Comment: Seeking a tool for enrichment of a small list of ranked genes
27 days ago by Aspire ▴ 370
4
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11
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765
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Seeking a tool for enrichment of a small list of ranked genes
enrichment
21 days ago by Aspire ▴ 370
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2
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765
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Comment: Comment: Seeking a tool for enrichment of a small list of ranked genes
4 weeks ago by Aspire ▴ 370
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1
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765
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Comment: Comment: Seeking a tool for enrichment of a small list of ranked genes
4 weeks ago by Aspire ▴ 370
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0
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346
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Comment: Comment: Time-series statistics for a small amount of genes
4 months ago by Aspire ▴ 370
1
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2
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346
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Time-series statistics for a small amount of genes
rna-seq time-series
4 months ago by Aspire ▴ 370
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0
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16k
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Comment: Comment: Enrichment Score Interpretation
4 months ago by Aspire ▴ 370
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0
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545
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Comment: Comment: CIBERSORTx error (error in rep(2, size * length(cells) -1)) : invalid 'times' ar
4 months ago by Aspire ▴ 370
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1
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361
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Creating a signature matrix using CibersortX
CibersortX deconvolution
updated 4 months ago by ★ 18k • written 4 months ago by ▴ 370
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0
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338
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Comment: Comment: Change of cell proportions or differential expression?
4 months ago by Aspire ▴ 370
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0
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338
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Comment: Comment: Change of cell proportions or differential expression?
4 months ago by Aspire ▴ 370
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3
replies
338
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Change of cell proportions or differential expression?
deconvolution differential-expression
4 months ago by Aspire ▴ 370
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0
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801
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Comment: Comment: Differential analysis of enrichment results
5 months ago by Aspire ▴ 370
3
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8
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801
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Differential analysis of enrichment results
statistics enrichment
5 months ago by Aspire ▴ 370
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0
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801
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Comment: Comment: Differential analysis of enrichment results
5 months ago by Aspire ▴ 370
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2
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801
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Comment: Comment: Differential analysis of enrichment results
5 months ago by Aspire ▴ 370
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0
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1.5k
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Comment: Comment: Is it possible to run CibersortX with a very small number of samples?
7 months ago by Aspire ▴ 370
2
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4
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1.5k
views
Is it possible to run CibersortX with a very small number of samples?
cibersortx
7 months ago by Aspire ▴ 370
2
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1
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688
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Answer: Answer: p-value in CIBERSORT
updated 7 months ago by 44k • written 7 months ago by ▴ 370
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0
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427
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Comment: Comment: Adjust pvalue in R with different approach give me all different outcome
updated 7 months ago by 44k • written 7 months ago by ▴ 370
1
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0
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448
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Why not use iBAQ for calculating differential abundance of proteins?
protein maxquant
8 months ago by Aspire ▴ 370
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0
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5.8k
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Comment: Comment: Error in CIBERSORTx
8 months ago by Aspire ▴ 370
4
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3
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577
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Demonstrating lack of difference between two peaksets
DiffBind ChIP-seq
updated 9 months ago by 4.5k • written 9 months ago by ▴ 370
10
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4
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782
views
6 follow
Doublechecking enrichment of promoters of DE genes
motifs enrichment
updated 11 months ago by 86k • written 11 months ago by ▴ 370
0
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1
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849
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Comment: Comment: Consensus peaksets in DiffBind - conceptual questinos
12 months ago by Aspire ▴ 370
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3
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849
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Consensus peaksets in DiffBind - conceptual questinos
DiffBind
updated 12 months ago by ★ 2.1k • written 12 months ago by ▴ 370
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0
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2.2k
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Comment: Comment: What statistical test to apply for DE after CibersortX deconvolution
15 months ago by Aspire ▴ 370
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1
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2.2k
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Comment: Comment: What statistical test to apply for DE after CibersortX deconvolution
19 months ago by Aspire ▴ 370
1
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5
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2.2k
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What statistical test to apply for DE after CibersortX deconvolution
cibersortx differential-expression t-test deconvolution
15 months ago by Aspire ▴ 370
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0
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1.1k
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Comment: Comment: Brain cell type deconvolution
20 months ago by Aspire ▴ 370
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1
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2.1k
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Comment: Comment: ERROR using CIBERSORTx Docker version
20 months ago by Aspire ▴ 370
1
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1
reply
551
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How to correctly apply -len/fragLength parameter in Homer's annotatePeaks.pl ?
homer
updated 2.2 years ago by 5.0k • written 2.2 years ago by ▴ 370
5
votes
2
replies
1.2k
views
How to avoid overfitting using SVA?
RNA-Seq sva overfitting
updated 2.5 years ago by 86k • written 4.2 years ago by ▴ 370
5
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3
replies
1.5k
views
How to interpret similar motifs in Homer results
Homer
updated 2.6 years ago by ★ 28k • written 2.6 years ago by ▴ 370
5
votes
2
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757
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Why does DiffBind use the count of reads that fall within peaks?
DiffBind
updated 2.7 years ago by ★ 2.1k • written 2.7 years ago by ▴ 370
0
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0
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550
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A question on Homer normalization
homer
updated 2.8 years ago by 86k • written 2.8 years ago by ▴ 370
2
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1
reply
798
views
What is the correct order of flooring-normalization-batch correction for microarrays ?
microarray
updated 2.8 years ago by ▴ 40 • written 2.9 years ago by ▴ 370
1
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0
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767
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Comment: Comment: DESeq2 to compare between samples
2.9 years ago by Aspire ▴ 370
0
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0
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449
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Is there a public Yabi server available?
yabi
2.9 years ago by Aspire ▴ 370
0
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0
replies
515
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How to perform gene set enrichment analysis on genes that contribute to a specific PC?
pca
updated 3.0 years ago by 86k • written 3.0 years ago by ▴ 370
0
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4
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1.5k
views
What is the precise range that Solexa quality scores can take?
phred solexa quality-score fastq
3.1 years ago by Aspire ▴ 370
0
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1
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1.5k
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Comment: Comment: What is the range that Solexa quality scores can take?
3.1 years ago by Aspire ▴ 370
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0
replies
2.0k
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Comment: Comment: How to check which genes affect a continuous phenotype
3.2 years ago by Aspire ▴ 370
0
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1
reply
2.0k
views
Comment: Comment: How to check which genes affect a continuous phenotype
3.2 years ago by Aspire ▴ 370
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2
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2.0k
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Comment: Comment: How to check which genes affect a continuous phenotype
3.4 years ago by Aspire ▴ 370
3
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3
replies
1.4k
views
What QC measures to look for when performing deconvolution?
QC CibersortX deconvolution
updated 3.0 years ago by ★ 9.6k • written 3.4 years ago by ▴ 370
1
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2
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1.4k
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Comment: Comment: What QC measures to look for when performing deconvolution?
3.4 years ago by Aspire ▴ 370
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1
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1.0k
views
Comment: Comment: Gene filtering based on Coefficient of Variation > 50%
3.4 years ago by Aspire ▴ 370
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1
reply
4.4k
views
Answer: Answer: Searching a venn diagram online tool
3.4 years ago by Aspire ▴ 370
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