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5
votes
6
replies
2.0k
views
How to check which genes affect a continuous phenotype
multiple-comparisons multiple-regression microarrays regression
3.2 years ago by Aspire ▴ 370
0
votes
1
reply
3.0k
views
Comment: Comment: Purpose of bamCoverage RPKM normalization method
3.5 years ago by Aspire ▴ 370
5
votes
3
replies
3.0k
views
Purpose of bamCoverage RPKM normalization method
rpkm bamCoverage
updated 3.5 years ago by 86k • written 3.5 years ago by ▴ 370
0
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0
replies
13k
views
Comment: Comment: correct way of analyzing cell proportions in singlecell data
3.6 years ago by Aspire ▴ 370
3
votes
11
replies
2.8k
views
Does DiffBind correctly designate peaks with very small fold-change to be significant
DiffBind
updated 3.6 years ago by ★ 2.1k • written 3.9 years ago by ▴ 370
0
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0
replies
3.9k
views
Comment: Comment: DESeq2 count matrix read in
3.6 years ago by Aspire ▴ 370
0
votes
3
replies
1.3k
views
Cellular deconvolution intuition
deconvolution
3.6 years ago by Aspire ▴ 370
0
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0
replies
1.3k
views
Answer: Answer: Cellular deconvolution intuition
3.6 years ago by Aspire ▴ 370
2
votes
3
replies
898
views
Coverage required for 3' end RNA-seq methods
cel-seq2
updated 3.7 years ago by 8.9k • written 3.7 years ago by ▴ 370
0
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1
reply
2.4k
views
Comment: Comment: What are the necessary and sufficient conditions for applying a multiple hypothe
3.7 years ago by Aspire ▴ 370
0
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0
replies
1.3k
views
Comment: Comment: Cellular deconvolution intuition
3.7 years ago by Aspire ▴ 370
0
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1
reply
4.2k
views
Comment: Comment: How to get output of annotated genes from ChIPseeker tool
3.7 years ago by Aspire ▴ 370
0
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0
replies
1.6k
views
Comment: Comment: Help generating multiple annotations under one H3K27me3 peak
3.7 years ago by Aspire ▴ 370
2
votes
0
replies
1.9k
views
Answer: Answer: A mismatch between DiffBind's results and the same results retreieved as DESeq2
3.7 years ago by Aspire ▴ 370
0
votes
1
reply
1.9k
views
Comment: Comment: A mismatch between DiffBind's results and the same results retreieved as DESeq2
3.7 years ago by Aspire ▴ 370
0
votes
1
reply
2.4k
views
Comment: Comment: What are the necessary and sufficient conditions for applying a multiple hypothe
3.7 years ago by Aspire ▴ 370
0
votes
1
reply
1.9k
views
Comment: Comment: A mismatch between DiffBind's results and the same results retreieved as DESeq2
3.7 years ago by Aspire ▴ 370
2
votes
6
replies
1.9k
views
A mismatch between DiffBind's results and the same results retreieved as DESeq2 (from DiffBind)
DiffBind
updated 3.7 years ago by ★ 18k • written 3.7 years ago by ▴ 370
0
votes
1
reply
2.4k
views
Comment: Comment: What are the necessary and sufficient conditions for applying a multiple hypothe
3.7 years ago by Aspire ▴ 370
5
votes
8
replies
2.4k
views
What are the necessary and sufficient conditions for applying a multiple hypothesis correction?
multiple-comparisons statistics
updated 3.7 years ago by 22k • written 3.7 years ago by ▴ 370
0
votes
1
reply
986
views
Comment: C: How can the assumption of a broad/narrow peak be checked?
3.8 years ago by Aspire ▴ 370
3
votes
3
replies
986
views
How can the assumption of a broad/narrow peak be checked?
macs2 ChIP-Seq
3.8 years ago by Aspire ▴ 370
0
votes
2
replies
992
views
On understanding the axis of a PCA plot
pca
updated 3.8 years ago by ★ 4.8k • written 3.8 years ago by ▴ 370
0
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1
reply
3.0k
views
Comment: C: A question on the interpretation of a PCA plot
3.8 years ago by Aspire ▴ 370
0
votes
0
replies
1.5k
views
Basic questions about Ngsplot heatmaps
ngsplot heatmap
3.8 years ago by Aspire ▴ 370
0
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1
reply
4.4k
views
Comment: C: Are MACS2's summit or DiffBind's summit options are recommended for histone mark
3.9 years ago by Aspire ▴ 370
0
votes
0
replies
1.5k
views
Comment: C: Why does it make sense to use gene symbols instead of gene ids in enrichment sof
3.9 years ago by Aspire ▴ 370
1
vote
0
replies
1.9k
views
Interaction terms and main effects in DESeq2
RNA-Seq DESeq2
updated 3.9 years ago by 20 • written 5.4 years ago by ▴ 370
0
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0
replies
2.8k
views
Comment: C: Does DiffBind correctly designate peaks with very small fold-change to be signif
3.9 years ago by Aspire ▴ 370
0
votes
2
replies
2.8k
views
Comment: C: Does DiffBind correctly designate peaks with very small fold-change to be signif
3.9 years ago by Aspire ▴ 370
0
votes
1
reply
2.8k
views
Comment: C: Does DiffBind correctly designate peaks with very small fold-change to be signif
3.9 years ago by Aspire ▴ 370
0
votes
1
reply
2.8k
views
Comment: C: Does DiffBind correctly designate peaks with very small fold-change to be signif
3.9 years ago by Aspire ▴ 370
0
votes
3
replies
1.3k
views
Weird results in TopHat2 paired-end alignment
RNA-Seq TopHat2 paired-end
updated 4.0 years ago by 20 • written 4.2 years ago by ▴ 370
0
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1
reply
2.5k
views
Comment: C: Very generally speaking, what are valid criteria to decide that a sample is an o
4.0 years ago by Aspire ▴ 370
0
votes
0
replies
2.5k
views
Comment: C: Very generally speaking, what are valid criteria to decide that a sample is an o
4.0 years ago by Aspire ▴ 370
6
votes
5
replies
2.5k
views
Forum: Very generally speaking, what are valid criteria to decide that a sample is an outlier?
outliers
updated 19 months ago by 44k • written 4.0 years ago by ▴ 370
0
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0
replies
8.4k
views
Comment: C: How do I use Diffbind as a complete beginner?
4.0 years ago by Aspire ▴ 370
0
votes
0
replies
2.5k
views
Comment: C: Is there a reasonable way to rank peaks that are common between replicates?
4.0 years ago by Aspire ▴ 370
7
votes
4
replies
1.3k
views
Forum: Specific question on torturing the data until it confesses
ipa gene-set-enrichment statistics
updated 19 months ago by 44k • written 4.0 years ago by ▴ 370
0
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1
reply
4.5k
views
Comment: C: ChIP-seq or Cut and Run Differential Binding Analysis
4.0 years ago by Aspire ▴ 370
0
votes
0
replies
4.5k
views
Comment: C: ChIP-seq or Cut and Run Differential Binding Analysis
4.0 years ago by Aspire ▴ 370
1
vote
1
reply
1.3k
views
Answer: A: Specific question on torturing the data until it confesses
4.0 years ago by Aspire ▴ 370
2
votes
6
replies
3.0k
views
A question on the interpretation of a PCA plot
pca
updated 4.0 years ago by 13k • written 4.0 years ago by ▴ 370
5
votes
3
replies
1.5k
views
Why does it make sense to use gene symbols instead of gene ids in enrichment software?
enrichr gene
updated 4.0 years ago by 13k • written 4.0 years ago by ▴ 370
0
votes
0
replies
648
views
How to understand the output of plotRap function in ChIPQC package?
ChIP-Seq
4.0 years ago by Aspire ▴ 370
14
votes
6
replies
2.5k
views
Is there a reasonable way to rank peaks that are common between replicates?
ChIP-Seq
updated 8 weeks ago by 86k • written 4.0 years ago by ▴ 370
1
vote
1
reply
2.5k
views
Comment: A: Is there a reasonable way to rank peaks that are common between replicates?
4.0 years ago by Aspire ▴ 370
0
votes
0
replies
3.9k
views
Comment: C: Handling replicates in Chip-seq
4.0 years ago by Aspire ▴ 370
1
vote
2
replies
1.4k
views
What could be the cause of different levels of binding in ChIP-Seq Input samples?
ChIP-Seq ngsplot
updated 4.1 years ago by 8.9k • written 4.1 years ago by ▴ 370
0
votes
0
replies
1.4k
views
Comment: C: Should the number of significantly DE genes rise with the number of SVs estimate
4.1 years ago by Aspire ▴ 370
151 results • Page 2 of 4
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